Verified Commit 09a8a7a0 authored by Renato Alves's avatar Renato Alves 🌱
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Add link to Francesco's reply

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...@@ -43,6 +43,8 @@ and build or knit R Markdown reports without RStudio. ...@@ -43,6 +43,8 @@ and build or knit R Markdown reports without RStudio.
To use the above command with the EMBL cluster, don't forget to load the appropriate R `module` (e.g. `module add R-bundle-Bioconductor-GBCS/3.11-foss-2020a-R-4.0.0`) beforehand. To use the above command with the EMBL cluster, don't forget to load the appropriate R `module` (e.g. `module add R-bundle-Bioconductor-GBCS/3.11-foss-2020a-R-4.0.0`) beforehand.
See also [this approach from Francesco Tabaro](https://chat.embl.org/embl/pl/gte6cdnu6fyrura7xdkdkuxfoh) to build a report by submitting a SLURM job directly from R.
If you see errors related to `X11 display`, try adding `options(bitmapType='cairo')` to your script or `~/.Rprofile`, as described in the [GBCS wiki][cairo]. If you see errors related to `X11 display`, try adding `options(bitmapType='cairo')` to your script or `~/.Rprofile`, as described in the [GBCS wiki][cairo].
Happy reporting! Happy reporting!
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