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image-analysis-training-resources
Commit 5a7f4c2d authored by Aliaksandr Halavatyi's avatar Aliaksandr Halavatyi
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Merge branch 'ijMacroBinarization' into 'master' 

Add IJ macro code for module: binarization

See merge request !8
parents b2f48e34 b02b5985
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      modules/binarization.md
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      ...@@ -19,7 +19,6 @@ Few sentences. ...@@ -19,7 +19,6 @@ Few sentences.
      ## Concept map ## Concept map
      <img src='https://g.gravizo.com/svg? <img src='https://g.gravizo.com/svg?
      digraph G { digraph G {
      shift [fontcolor=white,color=white]; shift [fontcolor=white,color=white];
      ...@@ -36,6 +35,25 @@ shift [fontcolor=white,color=white]; ...@@ -36,6 +35,25 @@ shift [fontcolor=white,color=white];
      ## Activity ## Activity
      Open an image and binarize it by applying a threshold.
      <details>
      <summary>ImageJ user interface</summary>
      - `Open...`
      - "/image-analysis-training-resources/image_data/xy_8bit__two_cells.tif";
      - `Threshold...`
      </details>
      <details>
      <summary>ImageJ macro</summary>
      open("/image-analysis-training-resources/image_data/xy_8bit__two_cells.tif");
      setThreshold(30, 255);
      setOption("BlackBackground", true);
      run("Convert to Mask");
      </details>
      ## Formative assessment ## Formative assessment
      ......
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