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image-analysis-training-resources
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grp-bio-it
image-analysis-training-resources
Commits
5a7f4c2d
Commit
5a7f4c2d
authored
May 28, 2019
by
Aliaksandr Halavatyi
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Merge branch 'ijMacroBinarization' into 'master'
Add IJ macro code for module: binarization See merge request
!8
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b2f48e34
b02b5985
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#9754
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modules/binarization.md
View file @
5a7f4c2d
...
@@ -19,7 +19,6 @@ Few sentences.
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@@ -19,7 +19,6 @@ Few sentences.
## Concept map
## Concept map
<img src='https://g.gravizo.com/svg?
<img src='https://g.gravizo.com/svg?
digraph G {
digraph G {
shift [fontcolor=white,color=white];
shift [fontcolor=white,color=white];
...
@@ -36,6 +35,25 @@ shift [fontcolor=white,color=white];
...
@@ -36,6 +35,25 @@ shift [fontcolor=white,color=white];
## Activity
## Activity
Open an image and binarize it by applying a threshold.
<details>
<summary>
ImageJ user interface
</summary>
-
`Open...`
-
"/image-analysis-training-resources/image_data/xy_8bit__two_cells.tif";
-
`Threshold...`
</details>
<details>
<summary>
ImageJ macro
</summary>
open("/image-analysis-training-resources/image_data/xy_8bit__two_cells.tif");
setThreshold(30, 255);
setOption("BlackBackground", true);
run("Convert to Mask");
</details>
## Formative assessment
## Formative assessment
...
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