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image-analysis-training-resources
Commit 96da473e authored by Christian Tischer's avatar Christian Tischer
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Merge branch 'protocol-binarisation-jython' into 'master' 

Protocol binarisation jython

See merge request !12
parents e6ddc70e b70a78c1
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    modules/binarization.md
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    ...@@ -40,6 +40,12 @@ shift [fontcolor=white,color=white]; ...@@ -40,6 +40,12 @@ shift [fontcolor=white,color=white];
    ![binarization_figure_00](/figures/binarization_concept_example.png) ![binarization_figure_00](/figures/binarization_concept_example.png)
    ## Activity ## Activity
    <details open>
    <summary>Jython script</summary>
    <br>
    ```python
    from ij import IJ, ImagePlus
    from ij.plugin import Thresholder
    Open an image and binarize it by applying a threshold. Open an image and binarize it by applying a threshold.
    ...@@ -61,6 +67,16 @@ Open an image and binarize it by applying a threshold. ...@@ -61,6 +67,16 @@ Open an image and binarize it by applying a threshold.
    inputImage=IJ.getImage()
    IJ.setRawThreshold(inputImage, 60, 255, None)
    binaryImage=ImagePlus('Binary image',Thresholder.createMask(inputImage))
    binaryImage.show()
    ```
    </details>
    ## Formative assessment ## Formative assessment
    Quizz or something Quizz or something
    ......
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