diff --git a/_includes/dc/intro.html b/_includes/dc/intro.html
deleted file mode 100644
index 741aeebb5220dfc68634b62e7d33846b666f4e47..0000000000000000000000000000000000000000
--- a/_includes/dc/intro.html
+++ /dev/null
@@ -1,18 +0,0 @@
-<p>
-  <a href="{{site.dc_site}}">Data Carpentry</a>
-  aims to help researchers get their work done
-  in less time and with less pain
-  by teaching them basic research computing skills.
-  This hands-on workshop will cover basic concepts and tools,
-  including program design, version control, data management,
-  and task automation.
-  Participants will be encouraged to help one another
-  and to apply what they have learned to their own research problems.
-</p>
-<p align="center">
-  <em>
-    For more information on what we teach and why,
-    please see our paper
-    "<a href="http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001745">Best Practices for Scientific Computing</a>".
-  </em>
-</p>
diff --git a/_includes/dc/schedule.html b/_includes/dc/schedule.html
deleted file mode 100644
index 6894a19e3bee8ad4c19979fa721f4a881b0cb55f..0000000000000000000000000000000000000000
--- a/_includes/dc/schedule.html
+++ /dev/null
@@ -1,24 +0,0 @@
-<div class="row">
-  <div class="col-md-6">
-    <h3>Day 1</h3>
-    <table class="table table-striped">
-      <tr> <td>09:00</td>  <td>Automating tasks with the Unix shell</td> </tr>
-      <tr> <td>10:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>12:00</td>  <td>Lunch break</td> </tr>
-      <tr> <td>13:00</td>  <td>Building programs with Python</td> </tr>
-      <tr> <td>14:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>16:00</td>  <td>Wrap-up</td> </tr>
-    </table>
-  </div>
-  <div class="col-md-6">
-    <h3>Day 2</h3>
-    <table class="table table-striped">
-      <tr> <td>09:00</td>  <td>Version control with Git</td> </tr>
-      <tr> <td>10:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>12:00</td>  <td>Lunch break</td> </tr>
-      <tr> <td>13:00</td>  <td>Managing data with SQL</td> </tr>
-      <tr> <td>14:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>16:00</td>  <td>Wrap-up</td> </tr>
-    </table>
-  </div>
-</div>
diff --git a/_includes/dc/syllabus.html b/_includes/dc/syllabus.html
deleted file mode 100644
index a325ceec225b12ca11a6c1067984df6a4e3d1f24..0000000000000000000000000000000000000000
--- a/_includes/dc/syllabus.html
+++ /dev/null
@@ -1,96 +0,0 @@
-<div class="row">
-  <div class="col-md-6">
-    <h3 id="syllabus-shell">The Unix Shell</h3>
-    <ul>
-      <li>Files and directories</li>
-      <li>History and tab completion</li>
-      <li>Pipes and redirection</li>
-      <li>Looping over files</li>
-      <li>Creating and running shell scripts</li>
-      <li>Finding things</li>
-      <li><a href="{{site.swc_pages}}/shell-novice/reference/">Reference...</a></li>
-    </ul>
-  </div>
-  <div class="col-md-6">
-    <h3 id="syllabus-python">Programming in Python</h3>
-    <ul>
-      <li>Using libraries</li>
-      <li>Working with arrays</li>
-      <li>Reading and plotting data</li>
-      <li>Creating and using functions</li>
-      <li>Loops and conditionals</li>
-      <li>Defensive programming</li>
-      <li>Using Python from the command line</li>
-      <li><a href="{{site.swc_pages}}/python-novice-inflammation/reference/">Reference...</a></li>
-    </ul>
-  </div>
-  <!--
-  <div class="col-md-6">
-    <h3 id="syllabus-r">Programming in R</h3>
-    <ul>
-      <li>Working with vectors and data frames</li>
-      <li>Reading and plotting data</li>
-      <li>Creating and using functions</li>
-      <li>Loops and conditionals</li>
-      <li>Using R from the command line</li>
-      <li><a href="{{site.swc_pages}}/r-novice-inflammation/reference/">Reference...</a></li>
-    </ul>
-  </div>
-  -->
-  <!--
-  <div class="col-md-6">
-    <h3 id="syllabus-matlab">Programming in MATLAB</h3>
-    <ul>
-      <li>Working with arrays</li>
-      <li>Reading and plotting data</li>
-      <li>Creating and using functions</li>
-      <li>Loops and conditionals</li>
-      <li>Defensive programming</li>
-      <li><a href="{{site.swc_pages}}/matlab-novice-inflammation/reference/">Reference...</a></li>
-     </ul>
-   </div>
-   -->
-</div>
-
-<div class="row">
-  <div class="col-md-6">
-    <h3 id="syllabus-git">Version Control with Git</h3>
-    <ul>
-      <li>Creating a repository</li>
-      <li>Recording changes to files: <code>add</code>, <code>commit</code>, ...</li>
-      <li>Viewing changes: <code>status</code>, <code>diff</code>, ...</li>
-      <li>Ignoring files</li>
-      <li>Working on the web: <code>clone</code>, <code>pull</code>, <code>push</code>, ...</li>
-      <li>Resolving conflicts</li>
-      <li>Open licenses</li>
-      <li>Where to host work, and why</li>
-      <li><a href="{{site.swc_pages}}/git-novice/reference/">Reference...</a></li>
-    </ul>
-  </div>
-  <!--
-  <div class="col-md-6">
-    <h3 id="syllabus-sql">Managing Data with SQL</h3>
-    <ul>
-      <li>Reading and sorting data</li>
-      <li>Filtering with <code>where</code></li>
-      <li>Calculating new values on the fly</li>
-      <li>Handling missing values</li>
-      <li>Combining values using aggregation</li>
-      <li>Combining information from multiple tables using <code>join</code></li>
-      <li>Creating, modifying, and deleting data</li>
-      <li>Programming with databases</li>
-      <li><a href="{{site.swc_pages}}/sql-novice-survey/reference/">Reference...</a></li>
-    </ul>
-  </div>
-   -->
-  <div class="col-md-6">
-    <h3 id="syllabus-r">Open Refine</h3>
-    <ul>
-      <li>Introduction to OpenRefine</li>
-      <li>Importing data</li>
-      <li>Basic functions</li>
-      <li>Advanced Functions</li>
-      <li><a href="{{site.lc_pages}}library-openrefine/reference">Reference...</a></li>
-    </ul>
-  </div>
-</div>
diff --git a/_includes/dc/who.html b/_includes/dc/who.html
deleted file mode 100644
index 2d8e94ae37b5963fa172b354de338df6b85e7bdb..0000000000000000000000000000000000000000
--- a/_includes/dc/who.html
+++ /dev/null
@@ -1,8 +0,0 @@
-<p id="who">
-  <strong>Who:</strong>
-  The course is aimed at graduate students and other researchers.
-  <strong>
-    You don't need to have any previous knowledge of the tools
-    that will be presented at the workshop.
-  </strong>
-</p>
diff --git a/_includes/lc/intro.html b/_includes/lc/intro.html
deleted file mode 100644
index b218f2ba9cfc08d5d7407cf3ee7ce4bccdd8a08c..0000000000000000000000000000000000000000
--- a/_includes/lc/intro.html
+++ /dev/null
@@ -1,19 +0,0 @@
-<p>
-  <a href="{{site.lc_site}}">Library Carpentry</a>
-  is made by people working in library- and information-related roles to help you:
-</p>
-<ul>
-  <li>automate repetitive, boring, error-prone tasks</li>
-  <li>create, maintain and analyze sustainable and reusable data</li>
-  <li>work effectively with IT and systems colleagues</li>
-  <li>better understand the use of software in research</li>
-  <li>and much more...</li>
-</ul>
-<p align="center">
-  <em>
-    Library Carpentry introduces you to the fundamentals of computing
-    and provides you with a platform for further self-directed learning.
-    For more information on what we teach and why, please see our paper
-    "<a href="https://doi.org/10.18352/lq.10176">Library Carpentry: software skills training for library professionals</a>".
-  </em>
-</p>
diff --git a/_includes/lc/schedule.html b/_includes/lc/schedule.html
deleted file mode 100644
index cc2b592024206d450597e89b3d116a94ab58096c..0000000000000000000000000000000000000000
--- a/_includes/lc/schedule.html
+++ /dev/null
@@ -1,24 +0,0 @@
-<div class="row">
-  <div class="col-md-6">
-    <h3>Day 1</h3>
-    <table class="table table-striped">
-      <tr> <td>09:00</td>  <td>Data Intro for Librarians</td> </tr>
-      <tr> <td>10:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>12:00</td>  <td>Lunch break</td> </tr>
-      <tr> <td>13:00</td>  <td>Shell Lessons for Libraries</td> </tr>
-      <tr> <td>14:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>16:00</td>  <td>Wrap-up</td> </tr>
-    </table>
-  </div>
-  <div class="col-md-6">
-    <h3>Day 2</h3>
-    <table class="table table-striped">
-      <tr> <td>09:00</td>  <td>Git Intro for Librarians</td> </tr>
-      <tr> <td>10:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>12:00</td>  <td>Lunch break</td> </tr>
-      <tr> <td>13:00</td>  <td>OpenRefine for Librarians</td> </tr>
-      <tr> <td>14:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>16:00</td>  <td>Wrap-up</td> </tr>
-    </table>
-  </div>
-</div>
diff --git a/_includes/lc/syllabus.html b/_includes/lc/syllabus.html
deleted file mode 100644
index e2c7012e071afedfdf6d0e91c101a6539ffe5e26..0000000000000000000000000000000000000000
--- a/_includes/lc/syllabus.html
+++ /dev/null
@@ -1,69 +0,0 @@
-<div class="row">
-  <div class="col-md-6">
-    <h3 id="syllabus-python">Data Intro</h3>
-    <ul>
-      <li>Intro to data</li>
-      <li>Jargon busting</li>
-      <li>Keyboard shortcuts</li>
-      <li>Plain text formats</li>
-      <li>Naming files</li>
-      <li>Regular expressions</li>
-      <li><a href="https://data-lessons.github.io/library-data-intro/reference/">Reference...</a></li>
-    </ul>
-  </div>
-  <div class="col-md-6">
-    <h3 id="syllabus-shell">The Unix Shell</h3>
-    <ul>
-      <li>Files and directories</li>
-      <li>History and tab completion</li>
-      <li>Counting and sorting contents in files</li>
-      <li>Pipes and redirection</li>
-      <li>Mining or searching in files</li>
-      <li><a href="https://data-lessons.github.io/library-shell/reference/">Reference...</a></li>
-    </ul>
-  </div>
-
-</div>
-
-<div class="row">
-  <div class="col-md-6">
-    <h3 id="syllabus-git">Version Control with Git</h3>
-    <ul>
-      <li>Creating a repository</li>
-      <li>Configuring git</li>
-      <li>Recording changes to files: <code>add</code>, <code>commit</code>, ...</li>
-      <li>Viewing state changes with <code>status</code></li>
-      <li>Working on the web: <code>clone</code>, <code>pull</code>, <code>push</code>, ...</li>
-      <li>Where to host work, and why</li>
-      <li><a href="https://data-lessons.github.io/library-git/reference">Reference...</a></li>
-    </ul>
-  </div>
-  <div class="col-md-6">
-    <div class="col-md-6">
-      <h3 id="syllabus-r">Open Refine</h3>
-      <ul>
-        <li>Introduction to OpenRefine</li>
-        <li>Importing data</li>
-        <li>Basic functions</li>
-        <li>Advanced Functions</li>
-        <li><a href="https://data-lessons.github.io/library-openrefine/reference">Reference...</a></li>
-      </ul>
-    </div>
-  </div>
-</div>
-<!--div class="row">
-  <div class="col-md-6">
-    <h3 id="syllabus-sql">SQL Intro</h3>
-    <ul>
-      <li>What is SQL?</li>
-      <li>Intro to SQLite Manager</li>
-      <li>Importing a database</li>
-      <li>Reading and sorting data</li>
-      <li>Filtering with <code>where</code></li>
-      <li>Combining values using aggregation</li>
-      <li>Combining information from multiple tables using <code>join</code></li>
-      <li><a href="https://data-lessons.github.io//library-sql/reference/">Reference...</a></li>
-    </ul>
-  </div>
-</div>
--->
diff --git a/_includes/lc/who.html b/_includes/lc/who.html
deleted file mode 100644
index ecbf7066d2826bdedf16f4333113947a0b42a071..0000000000000000000000000000000000000000
--- a/_includes/lc/who.html
+++ /dev/null
@@ -1,8 +0,0 @@
-<p id="who">
-  <strong>Who:</strong>
-  The course is for people working in library- and information-related roles.
-  <strong>
-    You don't need to have any previous knowledge of the tools that
-    will be presented at the workshop.
-  </strong>
-</p>
diff --git a/_includes/sc/intro.html b/_includes/sc/intro.html
deleted file mode 100644
index 7b9fbf57b91c2c40d07e12b7c0ff152a96e8b08b..0000000000000000000000000000000000000000
--- a/_includes/sc/intro.html
+++ /dev/null
@@ -1,18 +0,0 @@
-<p>
-  <a href="{{site.swc_site}}">Software Carpentry</a>
-  aims to help researchers get their work done
-  in less time and with less pain
-  by teaching them basic research computing skills.
-  This hands-on workshop will cover basic concepts and tools,
-  including program design, version control, data management,
-  and task automation.
-  Participants will be encouraged to help one another
-  and to apply what they have learned to their own research problems.
-</p>
-<p align="center">
-  <em>
-    For more information on what we teach and why,
-    please see our paper
-    "<a href="http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001745">Best Practices for Scientific Computing</a>".
-  </em>
-</p>
diff --git a/_includes/sc/schedule.html b/_includes/sc/schedule.html
deleted file mode 100644
index 6894a19e3bee8ad4c19979fa721f4a881b0cb55f..0000000000000000000000000000000000000000
--- a/_includes/sc/schedule.html
+++ /dev/null
@@ -1,24 +0,0 @@
-<div class="row">
-  <div class="col-md-6">
-    <h3>Day 1</h3>
-    <table class="table table-striped">
-      <tr> <td>09:00</td>  <td>Automating tasks with the Unix shell</td> </tr>
-      <tr> <td>10:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>12:00</td>  <td>Lunch break</td> </tr>
-      <tr> <td>13:00</td>  <td>Building programs with Python</td> </tr>
-      <tr> <td>14:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>16:00</td>  <td>Wrap-up</td> </tr>
-    </table>
-  </div>
-  <div class="col-md-6">
-    <h3>Day 2</h3>
-    <table class="table table-striped">
-      <tr> <td>09:00</td>  <td>Version control with Git</td> </tr>
-      <tr> <td>10:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>12:00</td>  <td>Lunch break</td> </tr>
-      <tr> <td>13:00</td>  <td>Managing data with SQL</td> </tr>
-      <tr> <td>14:30</td>  <td>Coffee</td> </tr>
-      <tr> <td>16:00</td>  <td>Wrap-up</td> </tr>
-    </table>
-  </div>
-</div>
diff --git a/_includes/sc/syllabus.html b/_includes/sc/syllabus.html
deleted file mode 100644
index a325ceec225b12ca11a6c1067984df6a4e3d1f24..0000000000000000000000000000000000000000
--- a/_includes/sc/syllabus.html
+++ /dev/null
@@ -1,96 +0,0 @@
-<div class="row">
-  <div class="col-md-6">
-    <h3 id="syllabus-shell">The Unix Shell</h3>
-    <ul>
-      <li>Files and directories</li>
-      <li>History and tab completion</li>
-      <li>Pipes and redirection</li>
-      <li>Looping over files</li>
-      <li>Creating and running shell scripts</li>
-      <li>Finding things</li>
-      <li><a href="{{site.swc_pages}}/shell-novice/reference/">Reference...</a></li>
-    </ul>
-  </div>
-  <div class="col-md-6">
-    <h3 id="syllabus-python">Programming in Python</h3>
-    <ul>
-      <li>Using libraries</li>
-      <li>Working with arrays</li>
-      <li>Reading and plotting data</li>
-      <li>Creating and using functions</li>
-      <li>Loops and conditionals</li>
-      <li>Defensive programming</li>
-      <li>Using Python from the command line</li>
-      <li><a href="{{site.swc_pages}}/python-novice-inflammation/reference/">Reference...</a></li>
-    </ul>
-  </div>
-  <!--
-  <div class="col-md-6">
-    <h3 id="syllabus-r">Programming in R</h3>
-    <ul>
-      <li>Working with vectors and data frames</li>
-      <li>Reading and plotting data</li>
-      <li>Creating and using functions</li>
-      <li>Loops and conditionals</li>
-      <li>Using R from the command line</li>
-      <li><a href="{{site.swc_pages}}/r-novice-inflammation/reference/">Reference...</a></li>
-    </ul>
-  </div>
-  -->
-  <!--
-  <div class="col-md-6">
-    <h3 id="syllabus-matlab">Programming in MATLAB</h3>
-    <ul>
-      <li>Working with arrays</li>
-      <li>Reading and plotting data</li>
-      <li>Creating and using functions</li>
-      <li>Loops and conditionals</li>
-      <li>Defensive programming</li>
-      <li><a href="{{site.swc_pages}}/matlab-novice-inflammation/reference/">Reference...</a></li>
-     </ul>
-   </div>
-   -->
-</div>
-
-<div class="row">
-  <div class="col-md-6">
-    <h3 id="syllabus-git">Version Control with Git</h3>
-    <ul>
-      <li>Creating a repository</li>
-      <li>Recording changes to files: <code>add</code>, <code>commit</code>, ...</li>
-      <li>Viewing changes: <code>status</code>, <code>diff</code>, ...</li>
-      <li>Ignoring files</li>
-      <li>Working on the web: <code>clone</code>, <code>pull</code>, <code>push</code>, ...</li>
-      <li>Resolving conflicts</li>
-      <li>Open licenses</li>
-      <li>Where to host work, and why</li>
-      <li><a href="{{site.swc_pages}}/git-novice/reference/">Reference...</a></li>
-    </ul>
-  </div>
-  <!--
-  <div class="col-md-6">
-    <h3 id="syllabus-sql">Managing Data with SQL</h3>
-    <ul>
-      <li>Reading and sorting data</li>
-      <li>Filtering with <code>where</code></li>
-      <li>Calculating new values on the fly</li>
-      <li>Handling missing values</li>
-      <li>Combining values using aggregation</li>
-      <li>Combining information from multiple tables using <code>join</code></li>
-      <li>Creating, modifying, and deleting data</li>
-      <li>Programming with databases</li>
-      <li><a href="{{site.swc_pages}}/sql-novice-survey/reference/">Reference...</a></li>
-    </ul>
-  </div>
-   -->
-  <div class="col-md-6">
-    <h3 id="syllabus-r">Open Refine</h3>
-    <ul>
-      <li>Introduction to OpenRefine</li>
-      <li>Importing data</li>
-      <li>Basic functions</li>
-      <li>Advanced Functions</li>
-      <li><a href="{{site.lc_pages}}library-openrefine/reference">Reference...</a></li>
-    </ul>
-  </div>
-</div>
diff --git a/_includes/sc/who.html b/_includes/sc/who.html
deleted file mode 100644
index 2d8e94ae37b5963fa172b354de338df6b85e7bdb..0000000000000000000000000000000000000000
--- a/_includes/sc/who.html
+++ /dev/null
@@ -1,8 +0,0 @@
-<p id="who">
-  <strong>Who:</strong>
-  The course is aimed at graduate students and other researchers.
-  <strong>
-    You don't need to have any previous knowledge of the tools
-    that will be presented at the workshop.
-  </strong>
-</p>
diff --git a/fig/.gitkeep b/fig/.gitkeep
deleted file mode 100644
index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000