image-analysis-training-resources merge requestshttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests2019-05-28T09:43:42Zhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/2Add binarization2019-05-28T09:43:42ZChristian TischerAdd binarizationAdding binarization templateAdding binarization templateAliaksandr HalavatyiAliaksandr Halavatyihttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/1Add contributing guidance. Fixes #112019-05-28T09:50:41ZToby HodgesAdd contributing guidance. Fixes #11Closes #11Closes #11Christian TischerChristian Tischerhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/4binarization concept maps2019-05-28T11:36:45ZAliaksandr Halavatyibinarization concept mapsChristian TischerChristian Tischerhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/3Clean up folder structure2019-05-28T11:38:34ZChristian TischerClean up folder structureM. Julius HossainM. Julius Hossainhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/5Add a `.gitignore`2019-05-28T11:45:22ZToby HodgesAdd a `.gitignore`Closes #14Closes #14Aliaksandr HalavatyiAliaksandr Halavatyihttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/6Binarization figure 22019-05-28T11:57:06ZChristian TischerBinarization figure 2M. Julius HossainM. Julius Hossainhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/7Setup GitLab Pages with Jekyll2019-05-28T12:23:17ZToby HodgesSetup GitLab Pages with JekyllCloses #10
Includes basic setup of GitLab Pages with Jekyll.Closes #10
Includes basic setup of GitLab Pages with Jekyll.Christian TischerChristian Tischerhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/8Add IJ macro code for module: binarization2019-05-28T12:36:35ZChristian TischerAdd IJ macro code for module: binarizationAliaksandr HalavatyiAliaksandr Halavatyihttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/9Binarization title2019-05-28T12:37:33ZChristian TischerBinarization titleToby HodgesToby Hodgeshttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/10try absolute figure path2019-05-28T12:41:59ZToby Hodgestry absolute figure pathhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/11Binarization julius2019-05-28T12:46:51ZM. Julius HossainBinarization juliusAliaksandr HalavatyiAliaksandr Halavatyihttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/12Protocol binarisation jython2019-05-28T12:48:04ZAliaksandr HalavatyiProtocol binarisation jythonhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/13Protocol binarisation jython2019-05-28T13:04:56ZAliaksandr HalavatyiProtocol binarisation jythonChristian TischerChristian Tischerhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/14Update binarization.md2019-05-28T13:14:43ZChristian TischerUpdate binarization.mdChristian TischerChristian Tischerhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/15Matlab code added on binarization.md2019-05-28T13:28:40ZM. Julius HossainMatlab code added on binarization.mdAliaksandr HalavatyiAliaksandr Halavatyihttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/16Module refactoring2019-05-29T07:35:17ZChristian TischerModule refactoring@halavaty @hossain
I took all the existing training material and refactored it into smaller modules.
Some modules are still a bit too big. I created issues for them.@halavaty @hossain
I took all the existing training material and refactored it into smaller modules.
Some modules are still a bit too big. I created issues for them.M. Julius HossainM. Julius Hossainhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/17Add website link to README.md2019-05-29T07:45:41ZChristian TischerAdd website link to README.mdChristian TischerChristian Tischerhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/18Add more details to CONTRIBUTE.md2019-05-29T16:32:44ZChristian TischerAdd more details to CONTRIBUTE.mdToby HodgesToby Hodgeshttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/21Rank filter context2019-06-06T09:00:23ZAliaksandr HalavatyiRank filter contextI did some modifications. Can you give me feedback whether style is ok, then I try to do the rest tomorrow.
Changes made so far:
1. filter_rank module is split in 4 different modules:
1. filter_neighbourhood
1. filter_rank
1. filter...I did some modifications. Can you give me feedback whether style is ok, then I try to do the rest tomorrow.
Changes made so far:
1. filter_rank module is split in 4 different modules:
1. filter_neighbourhood
1. filter_rank
1. filter_morphological
1. local_background_subtraction
2. Erosion and dilation are defined as "morphological operations", which build on top of "rank filters"
3. rank filters module
1. changed concept map
2. add requirements, motivation, and learning objectives
4. morphological filters module
1. change concept map
2. formula explained in concept map
Context of *local background* block and *neighbourhood filters* block not changed yet.Christian TischerChristian Tischerhttps://git.embl.de/grp-bio-it/image-analysis-training-resources/-/merge_requests/19Add content to index.md2019-06-06T19:00:01ZChristian TischerAdd content to index.mdToby HodgesToby Hodges