Commit b70a78c1 authored by Aliaksandr Halavatyi's avatar Aliaksandr Halavatyi

Merge branch 'master' of...

Merge branch 'master' of https://git.embl.de/grp-bio-it/image-analysis-training-resources into protocol-binarisation-jython
parents 00aa8005 5a7f4c2d
Pipeline #9759 passed with stage
in 52 seconds
......@@ -19,7 +19,6 @@ Few sentences.
## Concept map
<img src='https://g.gravizo.com/svg?
digraph G {
shift [fontcolor=white,color=white];
......@@ -42,6 +41,25 @@ shift [fontcolor=white,color=white];
from ij import IJ, ImagePlus
from ij.plugin import Thresholder
Open an image and binarize it by applying a threshold.
<details>
<summary>ImageJ user interface</summary>
- `Open...`
- "/image-analysis-training-resources/image_data/xy_8bit__two_cells.tif";
- `Threshold...`
</details>
<details>
<summary>ImageJ macro</summary>
open("/image-analysis-training-resources/image_data/xy_8bit__two_cells.tif");
setThreshold(30, 255);
setOption("BlackBackground", true);
run("Convert to Mask");
</details>
inputImage=IJ.getImage()
......
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