Commit c32616b1 authored by Christian Tischer's avatar Christian Tischer

Simple MLJ Macro

parent 33fef186
Pipeline #10178 passed with stage
in 29 seconds
# @File image
# @File (style='directory') outputDir
// Open image
open(image);
// Binarize
run("Auto Threshold", "method=Huang white");
// Connected components
run("Connected Components Labeling", "connectivity=4 type=[16 bits]");
// Measure
run("Analyze Regions", "area perimeter");
// Save
saveAs("Results", outputDir + File.separator + File.nameWithoutExtension + ".csv" );
// Clean up
run("Close")
run("Close")
run("Close")
......@@ -5,17 +5,33 @@
### Essentials
1. image_pixels.md
2. pixel_calibration.md
9:30 - 12:30 - 30min break ~ 2.5 hours = 150 min ~ 25 minutes per module
This could be a nice one-day schedule!
0. General setup and introduction
1. image_pixels.md (just mention pixel calibration, set to 1,1!) but don't do the actual module!)
2. pixel_calibration.md (leave out)
3. image_display.md
4. pixel_data_types.md
5. pixel_processing.md
13:30 - 16:00 - 20min break = 130 min => also around 25 minutes per module
6. binarization.md
7. connected_components.md
8. measure_shapes.md
9. measure_intensities.md // TODO: Concept map
9. measure_intensities.md (Conceptual and using MLJ)
11. basic_image_analysis_workflow.md (do it including manual background subtraction)
13. local_background_subtraction.md ( use median-based with auto-phagosome example )
10. filter_neighbourhood.md
11. basic_image_analysis_workflow.md // draw it
## Local background subtraction
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment