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image-analysis-training-resources
Commit fc22978a authored by Christian Tischer's avatar Christian Tischer
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.gitignore fix

parent 0821111e
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    GEM
    remote: https://rubygems.org/
    specs:
    addressable (2.6.0)
    public_suffix (>= 2.0.2, < 4.0)
    colorator (1.1.0)
    commonmarker (0.17.13)
    ruby-enum (~> 0.5)
    concurrent-ruby (1.1.5)
    ffi (1.11.1)
    forwardable-extended (2.6.0)
    i18n (1.6.0)
    concurrent-ruby (~> 1.0)
    jekyll (3.4.0)
    addressable (~> 2.4)
    colorator (~> 1.0)
    jekyll-sass-converter (~> 1.0)
    jekyll-watch (~> 1.1)
    kramdown (~> 1.3)
    liquid (~> 3.0)
    mercenary (~> 0.3.3)
    pathutil (~> 0.9)
    rouge (~> 1.7)
    safe_yaml (~> 1.0)
    jekyll-commonmark (1.2.0)
    commonmarker (~> 0.14)
    jekyll (>= 3.0, < 4.0)
    jekyll-commonmark-ghpages (0.1.0)
    commonmarker (~> 0.17.6)
    jekyll-commonmark (~> 1)
    jekyll-sass-converter (1.5.2)
    sass (~> 3.4)
    jekyll-watch (1.5.1)
    listen (~> 3.0)
    kramdown (1.17.0)
    liquid (3.0.6)
    listen (3.1.5)
    rb-fsevent (~> 0.9, >= 0.9.4)
    rb-inotify (~> 0.9, >= 0.9.7)
    ruby_dep (~> 1.2)
    mercenary (0.3.6)
    pathutil (0.16.2)
    forwardable-extended (~> 2.6)
    public_suffix (3.1.0)
    rb-fsevent (0.10.3)
    rb-inotify (0.10.0)
    ffi (~> 1.0)
    rouge (1.11.1)
    ruby-enum (0.7.2)
    i18n
    ruby_dep (1.5.0)
    safe_yaml (1.0.5)
    sass (3.7.4)
    sass-listen (~> 4.0.0)
    sass-listen (4.0.0)
    rb-fsevent (~> 0.9, >= 0.9.4)
    rb-inotify (~> 0.9, >= 0.9.7)
    PLATFORMS
    ruby
    DEPENDENCIES
    jekyll (= 3.4.0)
    jekyll-commonmark-ghpages
    tzinfo-data
    RUBY VERSION
    ruby 2.6.2p47
    BUNDLED WITH
    2.0.1
    _site/CONTRIBUTING.html deleted 100644 → 0
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    This diff is collapsed.
    _site/Gemfile deleted 100644 → 0
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    source "https://rubygems.org"
    ruby RUBY_VERSION
    # This will help ensure the proper Jekyll version is running.
    gem "jekyll", "3.4.0"
    # Windows does not include zoneinfo files, so bundle the tzinfo-data gem
    gem 'tzinfo-data', platforms: [:mingw, :mswin, :x64_mingw, :jruby]
    # install GH-flavoured MD plugin
    group :jekyll_plugins do
    gem 'jekyll-commonmark-ghpages'
    end
    _site/Gemfile.lock deleted 100644 → 0
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    GEM
    remote: https://rubygems.org/
    specs:
    addressable (2.6.0)
    public_suffix (>= 2.0.2, < 4.0)
    colorator (1.1.0)
    commonmarker (0.17.13)
    ruby-enum (~> 0.5)
    concurrent-ruby (1.1.5)
    ffi (1.11.1)
    forwardable-extended (2.6.0)
    i18n (1.6.0)
    concurrent-ruby (~> 1.0)
    jekyll (3.4.0)
    addressable (~> 2.4)
    colorator (~> 1.0)
    jekyll-sass-converter (~> 1.0)
    jekyll-watch (~> 1.1)
    kramdown (~> 1.3)
    liquid (~> 3.0)
    mercenary (~> 0.3.3)
    pathutil (~> 0.9)
    rouge (~> 1.7)
    safe_yaml (~> 1.0)
    jekyll-commonmark (1.2.0)
    commonmarker (~> 0.14)
    jekyll (>= 3.0, < 4.0)
    jekyll-commonmark-ghpages (0.1.0)
    commonmarker (~> 0.17.6)
    jekyll-commonmark (~> 1)
    jekyll-sass-converter (1.5.2)
    sass (~> 3.4)
    jekyll-watch (1.5.1)
    listen (~> 3.0)
    kramdown (1.17.0)
    liquid (3.0.6)
    listen (3.1.5)
    rb-fsevent (~> 0.9, >= 0.9.4)
    rb-inotify (~> 0.9, >= 0.9.7)
    ruby_dep (~> 1.2)
    mercenary (0.3.6)
    pathutil (0.16.2)
    forwardable-extended (~> 2.6)
    public_suffix (3.1.0)
    rb-fsevent (0.10.3)
    rb-inotify (0.10.0)
    ffi (~> 1.0)
    rouge (1.11.1)
    ruby-enum (0.7.2)
    i18n
    ruby_dep (1.5.0)
    safe_yaml (1.0.5)
    sass (3.7.4)
    sass-listen (~> 4.0.0)
    sass-listen (4.0.0)
    rb-fsevent (~> 0.9, >= 0.9.4)
    rb-inotify (~> 0.9, >= 0.9.7)
    PLATFORMS
    ruby
    DEPENDENCIES
    jekyll (= 3.4.0)
    jekyll-commonmark-ghpages
    tzinfo-data
    RUBY VERSION
    ruby 2.6.2p47
    BUNDLED WITH
    2.0.1
    _site/LICENSE.md deleted 100644 → 0
    View file @ 0821111e
    This material is made available under the [Creative Commons Attribution license][cc-by-human].
    The following is a human-readable summary of (and not a substitute for)
    the [full legal text of the CC BY 4.0 license][cc-by-legal].
    You are free:
    * to **Share**---copy and redistribute the material in any medium or format
    * to **Adapt**---remix, transform, and build upon the material
    for any purpose, even commercially.
    The licensor cannot revoke these freedoms as long as you follow the
    license terms.
    Under the following terms:
    * **Attribution**---You must give appropriate credit (mentioning that
    your work is derived from work that is Copyright ©
    European Molecualr Biology Laboratory and, where practical, link to
    the [source project repository][our-gitlab-repo]) and [the license][cc-by-human],
    and indicate if changes were made. You may do
    so in any reasonable manner, but not in any way that suggests the
    licensor endorses you or your use.
    **No additional restrictions**---You may not apply legal terms or
    technological measures that legally restrict others from doing
    anything the license permits. With the understanding that:
    Notices:
    * You do not have to comply with the license for elements of the
    material in the public domain or where your use is permitted by an
    applicable exception or limitation.
    * No warranties are given. The license may not give you all of the
    permissions necessary for your intended use. For example, other
    rights such as publicity, privacy, or moral rights may limit how you
    use the material.
    [cc-by-human]: https://creativecommons.org/licenses/by/4.0/
    [cc-by-legal]: https://creativecommons.org/licenses/by/4.0/legalcode
    [our-gitlab-repo]: https://git.embl.de/grp-bio-it/image-analysis-training-resources/
    \ No newline at end of file
    _site/css/main.css deleted 100644 → 0
    View file @ 0821111e
    /**
    * Reset some basic elements
    */
    body, h1, h2, h3, h4, h5, h6,
    p, blockquote, pre, hr,
    dl, dd, ol, ul, figure {
    margin: 0;
    padding: 0; }
    /**
    * Basic styling
    */
    body {
    font: 400 16px/1.5 "Helvetica Neue", Helvetica, Arial, sans-serif;
    color: #111;
    background-color: #fdfdfd;
    -webkit-text-size-adjust: 100%;
    -webkit-font-feature-settings: "kern" 1;
    -moz-font-feature-settings: "kern" 1;
    -o-font-feature-settings: "kern" 1;
    font-feature-settings: "kern" 1;
    font-kerning: normal; }
    /**
    * Set `margin-bottom` to maintain vertical rhythm
    */
    h1, h2, h3, h4, h5, h6,
    p, blockquote, pre,
    ul, ol, dl, figure,
    .highlight {
    margin-bottom: 15px; }
    /**
    * Images
    */
    img {
    max-width: 100%;
    vertical-align: middle; }
    /**
    * Figures
    */
    figure > img {
    display: block; }
    figcaption {
    font-size: 14px; }
    /**
    * Lists
    */
    ul, ol {
    margin-left: 30px; }
    li > ul,
    li > ol {
    margin-bottom: 0; }
    /**
    * Headings
    */
    h1, h2, h3, h4, h5, h6 {
    font-weight: 400; }
    /**
    * Links
    */
    a {
    color: #2a7ae2;
    text-decoration: none; }
    a:visited {
    color: #1756a9; }
    a:hover {
    color: #111;
    text-decoration: underline; }
    /**
    * Blockquotes
    */
    blockquote {
    color: #828282;
    border-left: 4px solid #e8e8e8;
    padding-left: 15px;
    font-size: 18px;
    letter-spacing: -1px;
    font-style: italic; }
    blockquote > :last-child {
    margin-bottom: 0; }
    /**
    * Code formatting
    */
    pre,
    code {
    font-size: 15px;
    border: 1px solid #e8e8e8;
    border-radius: 3px;
    background-color: #eef; }
    code {
    padding: 1px 5px; }
    pre {
    padding: 8px 12px;
    overflow-x: auto; }
    pre > code {
    border: 0;
    padding-right: 0;
    padding-left: 0; }
    /**
    * Wrapper
    */
    .wrapper {
    max-width: -webkit-calc(800px - (30px * 2));
    max-width: calc(800px - (30px * 2));
    margin-right: auto;
    margin-left: auto;
    padding-right: 30px;
    padding-left: 30px; }
    @media screen and (max-width: 800px) {
    .wrapper {
    max-width: -webkit-calc(800px - (30px));
    max-width: calc(800px - (30px));
    padding-right: 15px;
    padding-left: 15px; } }
    /**
    * Clearfix
    */
    .wrapper:after, .footer-col-wrapper:after {
    content: "";
    display: table;
    clear: both; }
    /**
    * Icons
    */
    .icon > svg {
    display: inline-block;
    width: 16px;
    height: 16px;
    vertical-align: middle; }
    .icon > svg path {
    fill: #828282; }
    /**
    * Site header
    */
    .site-header {
    border-top: 5px solid #424242;
    border-bottom: 1px solid #e8e8e8;
    min-height: 56px;
    position: relative; }
    .site-title {
    font-size: 26px;
    font-weight: 300;
    line-height: 56px;
    letter-spacing: -1px;
    margin-bottom: 0;
    float: left; }
    .site-title, .site-title:visited {
    color: #424242; }
    .site-nav {
    float: right;
    line-height: 56px; }
    .site-nav .menu-icon {
    display: none; }
    .site-nav .page-link {
    color: #111;
    line-height: 1.5; }
    .site-nav .page-link:not(:last-child) {
    margin-right: 20px; }
    @media screen and (max-width: 600px) {
    .site-nav {
    position: absolute;
    top: 9px;
    right: 15px;
    background-color: #fdfdfd;
    border: 1px solid #e8e8e8;
    border-radius: 5px;
    text-align: right; }
    .site-nav .menu-icon {
    display: block;
    float: right;
    width: 36px;
    height: 26px;
    line-height: 0;
    padding-top: 10px;
    text-align: center; }
    .site-nav .menu-icon > svg {
    width: 18px;
    height: 15px; }
    .site-nav .menu-icon > svg path {
    fill: #424242; }
    .site-nav .trigger {
    clear: both;
    display: none; }
    .site-nav:hover .trigger {
    display: block;
    padding-bottom: 5px; }
    .site-nav .page-link {
    display: block;
    padding: 5px 10px;
    margin-left: 20px; }
    .site-nav .page-link:not(:last-child) {
    margin-right: 0; } }
    /**
    * Site footer
    */
    .site-footer {
    border-top: 1px solid #e8e8e8;
    padding: 30px 0; }
    .footer-heading {
    font-size: 18px;
    margin-bottom: 15px; }
    .contact-list,
    .social-media-list {
    list-style: none;
    margin-left: 0; }
    .footer-col-wrapper {
    font-size: 15px;
    color: #828282;
    margin-left: -15px; }
    .footer-col {
    float: left;
    margin-bottom: 15px;
    padding-left: 15px; }
    .footer-col-1 {
    width: -webkit-calc(35% - (30px / 2));
    width: calc(35% - (30px / 2)); }
    .footer-col-2 {
    width: -webkit-calc(20% - (30px / 2));
    width: calc(20% - (30px / 2)); }
    .footer-col-3 {
    width: -webkit-calc(45% - (30px / 2));
    width: calc(45% - (30px / 2)); }
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    .footer-col-1,
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    width: -webkit-calc(50% - (30px / 2));
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    width: calc(100% - (30px / 2)); } }
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    .footer-col {
    float: none;
    width: -webkit-calc(100% - (30px / 2));
    width: calc(100% - (30px / 2)); } }
    /**
    * Page content
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    .page-content {
    padding: 30px 0; }
    .page-heading {
    font-size: 20px; }
    .post-list {
    margin-left: 0;
    list-style: none; }
    .post-list > li {
    margin-bottom: 30px; }
    .post-meta {
    font-size: 14px;
    color: #828282; }
    .post-link {
    display: block;
    font-size: 24px; }
    /**
    * Posts
    */
    .post-header {
    margin-bottom: 30px; }
    .post-title {
    font-size: 42px;
    letter-spacing: -1px;
    line-height: 1; }
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    .post-title {
    font-size: 36px; } }
    .post-content {
    margin-bottom: 30px; }
    .post-content h2 {
    font-size: 32px; }
    @media screen and (max-width: 800px) {
    .post-content h2 {
    font-size: 28px; } }
    .post-content h3 {
    font-size: 26px; }
    @media screen and (max-width: 800px) {
    .post-content h3 {
    font-size: 22px; } }
    .post-content h4 {
    font-size: 20px; }
    @media screen and (max-width: 800px) {
    .post-content h4 {
    font-size: 18px; } }
    /**
    * Syntax highlighting styles
    */
    .highlight {
    background: #fff; }
    .highlighter-rouge .highlight {
    background: #eef; }
    .highlight .c {
    color: #998;
    font-style: italic; }
    .highlight .err {
    color: #a61717;
    background-color: #e3d2d2; }
    .highlight .k {
    font-weight: bold; }
    .highlight .o {
    font-weight: bold; }
    .highlight .cm {
    color: #998;
    font-style: italic; }
    .highlight .cp {
    color: #999;
    font-weight: bold; }
    .highlight .c1 {
    color: #998;
    font-style: italic; }
    .highlight .cs {
    color: #999;
    font-weight: bold;
    font-style: italic; }
    .highlight .gd {
    color: #000;
    background-color: #fdd; }
    .highlight .gd .x {
    color: #000;
    background-color: #faa; }
    .highlight .ge {
    font-style: italic; }
    .highlight .gr {
    color: #a00; }
    .highlight .gh {
    color: #999; }
    .highlight .gi {
    color: #000;
    background-color: #dfd; }
    .highlight .gi .x {
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    background-color: #afa; }
    .highlight .go {
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    .highlight .ow {
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    .highlight .sb {
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    .highlight .sc {
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    .highlight .sr {
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    _site/example-images/index.html deleted 100644 → 0
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    <!DOCTYPE html>
    <html>
    <head>
    <meta charset="utf-8">
    <meta http-equiv="X-UA-Compatible" content="IE=edge">
    <meta name="viewport" content="width=device-width, initial-scale=1">
    <title>Example Images</title>
    <meta name="description" content="A collection of material for teaching image analysis. Includes concept maps, exercises, example data
    ">
    <link rel="stylesheet" href="/image-analysis-training-resources/css/main.css">
    <link rel="canonical" href="http://localhost:4000/image-analysis-training-resources/example-images/">
    <link rel="alternate" type="application/rss+xml" title="Image Analysis Training" href="http://localhost:4000/image-analysis-training-resources/feed.xml">
    <script src="https://unpkg.com/mermaid@8.0.0/dist/mermaid.min.js"></script>
    <script>mermaid.initialize({startOnLoad:true});</script>
    </head>