linuxcommandline issueshttps://git.embl.de/grp-bio-it-workshops/linuxcommandline/-/issues2018-02-15T08:21:44Zhttps://git.embl.de/grp-bio-it-workshops/linuxcommandline/-/issues/6pymol example in linux_intermediate2018-02-15T08:21:44ZMarc Gouwpymol example in linux_intermediateThere are two (I think only two) places in the **linux_intermediate** course which use */g/software/bin/pymol* as an example, but this path no longer exists.
**TODO:**
* Come up with a working example to substitute the `pymol` one (eit...There are two (I think only two) places in the **linux_intermediate** course which use */g/software/bin/pymol* as an example, but this path no longer exists.
**TODO:**
* Come up with a working example to substitute the `pymol` one (either using a different `pymol`, or something other than `pymol`)Marc GouwMarc Gouwhttps://git.embl.de/grp-bio-it-workshops/linuxcommandline/-/issues/5fix find / xargs example in linux_intermediate2018-02-15T08:01:18ZMarc Gouwfix find / xargs example in linux_intermediateThe **linux_intermediate** example for `find` in conjuction with `xargs` suggests searching in `~/Documents` but maybe it would be better to look in exercise files.
**TODO:**
* use appropriate folder in exampleThe **linux_intermediate** example for `find` in conjuction with `xargs` suggests searching in `~/Documents` but maybe it would be better to look in exercise files.
**TODO:**
* use appropriate folder in exampleMarc GouwMarc Gouwhttps://git.embl.de/grp-bio-it-workshops/linuxcommandline/-/issues/4fix zgrep example in linux_intermediate2018-02-15T07:56:00ZMarc Gouwfix zgrep example in linux_intermediateThe example file for `zgrep` (in the `grep` section for the **linux_intermediate** course) in the example is: "IlluminaReads.fastq.gz", but this file does not exist in the repo.
**TODO:**
* Either create this file, or create a differen...The example file for `zgrep` (in the `grep` section for the **linux_intermediate** course) in the example is: "IlluminaReads.fastq.gz", but this file does not exist in the repo.
**TODO:**
* Either create this file, or create a different file, and adapt the example.Marc GouwMarc Gouwhttps://git.embl.de/grp-bio-it-workshops/linuxcommandline/-/issues/3Additions to intermediate course materials2017-05-21T04:58:41ZToby HodgesAdditions to intermediate course materialsTo be added to Intermediate material:
- `rev`
- when combined with `cut`, can be used to get the last x columns, without the need to first know the number of columns in the file.
- `fmt -1`
- turns a horizontal vector into a vertica...To be added to Intermediate material:
- `rev`
- when combined with `cut`, can be used to get the last x columns, without the need to first know the number of columns in the file.
- `fmt -1`
- turns a horizontal vector into a vertical
- `rename`
- nice tool to quickly change the names/extensions of a large number of files
- `xargs`Toby HodgesToby Hodgeshttps://git.embl.de/grp-bio-it-workshops/linuxcommandline/-/issues/2bug: pdf renders wrong2017-05-21T04:58:41ZHolger Dinkelbug: pdf renders wrongmake latex doesn't workmake latex doesn't workHolger DinkelHolger Dinkelhttps://git.embl.de/grp-bio-it-workshops/linuxcommandline/-/issues/1add branching to git_beginner2017-05-21T04:58:41ZHolger Dinkeladd branching to git_beginnerWe should add examples about how to use branching in git...We should add examples about how to use branching in git...Holger DinkelHolger Dinkel