Commit 1ea0ab07 authored by Josep Manel Andres Moscardo's avatar Josep Manel Andres Moscardo
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Update README.md

parent 14987b5e
# Schedule
- **9.30am**
## [What is a container?](https://github.com/titansmc/singularity-training-2019/raw/master/1.-singularity-training-what-are-containers.odp)
- **9.30am**
**Slides - https://github.com/titansmc/singularity-training-2019/raw/master/1.-singularity-training-what-are-containers.odp**
* What is Singularity?
......@@ -11,34 +13,54 @@
## [How do I create my own containers?](https://slides.com/mbhall88/making-containers)
- **10.00am**
**Slides - https://slides.com/mbhall88/making-containers**
- Writing "recipe"/definition files
- Recipe development using a sandbox and the shell command
- Remote builds
## [How do I access containers written by other people and/or share my own?](https://slides.com/mbhall88/remote-container-systems)
**Slides - https://slides.com/mbhall88/remote-container-systems**
## Playing with containers build
* Singularity Hub
* Sylabs Cloud
* Docker Hub
* Quay.io and Biocontainers
- **11.30am**
---
## Lunch break
- **12.30am**
## Playing with containers build
- **01.15pm**
## How do I run a container on the EMBL cluster? Running services as instances (RStudio. MongoDB...)
- **2.00pm**
**MongoDB example - https://git.embl.de/grp-bio-it/singularity-service-example**
**Cluster wiki - https://wiki.embl.de/cluster/Singularity#RStudio_in_the_cluster**
**How to access data inside the containers
**How to access data inside the containers**
## [How do I access containers written by other people and/or share my own?](https://slides.com/mbhall88/remote-container-systems)
- **03.00pm**
**Slides - https://slides.com/mbhall88/remote-container-systems**
* Singularity Hub
* Sylabs Cloud
* Docker Hub
* Quay.io and Biocontainers
---
## [How do I use containers with workflow systems?](https://slides.com/mbhall88/singularity-and-workflow-management-systems)
- **04.00pm**
**Slides - https://slides.com/mbhall88/singularity-and-workflow-management-systems**
- Snakemake
- Nextflow
......@@ -47,5 +69,7 @@
## [Troubleshooting, common mistakes](https://git.embl.de/moscardo/singularity-training-2019/raw/master/slides/2.-singularity-training-Installation-and-troubleshooting.odp)
- **04.20pm**
**Slides - https://git.embl.de/moscardo/singularity-training-2019/raw/master/slides/2.-singularity-training-Installation-and-troubleshooting.odp**
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