Commit f1caa239 authored by Josep Manel Andres Moscardo's avatar Josep Manel Andres Moscardo
Browse files

Merge branch 'master' of

parents a26c28d5 8e0a5285
Bootstrap: debootstrap Bootstrap: debootstrap
OSVersion: bionic OSVersion: bionic
MirrorURL: MirrorURL:
Include: software-properties-common
%post %post
apt update
apt install -y software-properties-common
apt-add-repository universe apt-add-repository universe
apt update apt install -y wget bzip2
apt install -y wget
wget -O wget -O
bash -b -p "$HOME"/miniconda bash -b -p /opt/miniconda
export PATH="$HOME/miniconda/bin:$PATH" export PATH="/opt/miniconda/bin:$PATH"
echo "PATH=$HOME/miniconda/bin:$PATH" >> "$SINGULARITY_ENVIRONMENT" echo "PATH=/opt/miniconda/bin:$PATH" >> "$SINGULARITY_ENVIRONMENT"
. ./$HOME/miniconda/bin/activate
conda install -y -c bioconda bwa conda install -y -c bioconda bwa
%test %test
export PATH="$HOME/miniconda/bin:$PATH" export PATH="/opt/miniconda/bin:$PATH"
command -v conda >/dev/null 2>&1 || exit 1 command -v conda >/dev/null 2>&1 || exit 1
command -v bwa >/dev/null 2>&1 || exit 1 command -v bwa >/dev/null 2>&1 || exit 1
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