CBA issueshttps://git.embl.de/grp-cba/cba/-/issues2024-03-25T10:35:58Zhttps://git.embl.de/grp-cba/cba/-/issues/17Move conda installation instructions to cba-resources2024-03-25T10:35:58ZChristian TischerMove conda installation instructions to cba-resourcesThese instructions should be moved to cba-resources repository: https://git.embl.de/grp-cba/cba/-/blob/master/resources_access/conda-environments.md?ref_type=heads#current-environments
Converting them to YAML files would also be good.These instructions should be moved to cba-resources repository: https://git.embl.de/grp-cba/cba/-/blob/master/resources_access/conda-environments.md?ref_type=heads#current-environments
Converting them to YAML files would also be good.Arif KhanArif Khanhttps://git.embl.de/grp-cba/cba/-/issues/16improve statistics.py -- consultancies per month2024-03-13T15:27:18ZArif Khanimprove statistics.py -- consultancies per month* add some code to \`statistics.py\` to export data for the number of consultancies per month for a given period* add some code to \`statistics.py\` to export data for the number of consultancies per month for a given periodArif KhanArif Khanhttps://git.embl.de/grp-cba/cba/-/issues/15Batch execution of TrackMate2024-03-07T11:58:15ZChristian TischerBatch execution of TrackMate@zhuang do you know how to batch run Trackmate on many movies?@zhuang do you know how to batch run Trackmate on many movies?https://git.embl.de/grp-cba/cba/-/issues/14add ome_zarr_env installation instructions2023-12-06T11:52:21ZChristian Tischeradd ome_zarr_env installation instructionsPlease add more info here on how this was (should be) created:
https://git.embl.de/grp-cba/cba/-/blob/master/development/cluster.md#ome_zarr_envPlease add more info here on how this was (should be) created:
https://git.embl.de/grp-cba/cba/-/blob/master/development/cluster.md#ome_zarr_envBugra OezdemirBugra Oezdemirhttps://git.embl.de/grp-cba/cba/-/issues/13Add description for how to use TurboVNC2023-07-03T14:18:37ZChristian TischerAdd description for how to use TurboVNC@schorb @hennies please one MD file in the development folder.@schorb @hennies please one MD file in the development folder.https://git.embl.de/grp-cba/cba/-/issues/12Documentation of the recipe for YOLO on Cluster?2023-06-16T15:13:53ZArif KhanDocumentation of the recipe for YOLO on Cluster?@tischer Shall we document somehow how we installed `yoloV8` on cluster?@tischer Shall we document somehow how we installed `yoloV8` on cluster?Arif KhanArif Khanhttps://git.embl.de/grp-cba/cba/-/issues/10Ontology for image analysis tasks/workflows2023-03-06T14:33:10ZDominik KutraOntology for image analysis tasks/workflowsIn order to make projects (that from now on live on gitlab) more findable, we thought about using "topics" for these repos. Ideally the terms there would follow a common scheme, an ontology.
So far, J-K proposed experimental factor onto...In order to make projects (that from now on live on gitlab) more findable, we thought about using "topics" for these repos. Ideally the terms there would follow a common scheme, an ontology.
So far, J-K proposed experimental factor ontology (EFO)https://git.embl.de/grp-cba/cba/-/issues/9Move consultancy sessions2022-08-30T12:22:15ZChristian TischerMove consultancy sessionsIn terms of productivity @akhan and I thought having mornings free for productive work would be nice.
Thus shifting the consultancy sessions to the less productive afternoons may be good.
We thought about Monday and Thursday 14:00 - 15:00.In terms of productivity @akhan and I thought having mornings free for productive work would be nice.
Thus shifting the consultancy sessions to the less productive afternoons may be good.
We thought about Monday and Thursday 14:00 - 15:00.Christian TischerChristian Tischerhttps://git.embl.de/grp-cba/cba/-/issues/8Clean cba/exchange2022-08-09T15:15:17ZChristian TischerClean cba/exchangehttps://git.embl.de/grp-cba/cba/-/issues/7Access CBA exchange2022-06-27T06:50:25ZChristian TischerAccess CBA exchangeWe should make this a separate document.We should make this a separate document.https://git.embl.de/grp-cba/cba/-/issues/3Imaris training videos2021-11-14T09:34:17ZChristian TischerImaris training videosWe should go through them an find individual videos that are worth watching.
cc @terjungWe should go through them an find individual videos that are worth watching.
cc @terjungArif KhanArif Khanhttps://git.embl.de/grp-cba/cba/-/issues/4Check ICS saving from Imaris2021-11-14T09:33:28ZChristian TischerCheck ICS saving from Imarishttps://git.embl.de/grp-almf/cba/-/edit/master/software/Imaris.md#L31https://git.embl.de/grp-almf/cba/-/edit/master/software/Imaris.md#L31Christian TischerChristian Tischerhttps://git.embl.de/grp-cba/cba/-/issues/5Check Imaris Surface slice view instructions2021-11-14T09:31:32ZChristian TischerCheck Imaris Surface slice view instructionshttps://git.embl.de/grp-almf/cba/-/edit/master/software/Imaris.md#L35https://git.embl.de/grp-almf/cba/-/edit/master/software/Imaris.md#L35