Commit adf6bc4b authored by M. Julius Hossain's avatar M. Julius Hossain

Update README.md

parent 3dcef6c3
# Source code assoicated with the article Cattaglio et al., Biorxiv, 2018
>**Architectural Features of 3D Genome Organization Revealed by Counting CTCF and
Cohesin Molecules** Claudia Cattoglio, Iryna Pustova, Jaclyn J Ho, Carla J Inouye, Gina M Dailey,
Xavier Darzacq, Robert Tjian, Anders S Hansen
doi: https://doi.org/10.1101/370650
## Functionality
This code package segments lanmarks: cell and nuclear volumes from confocal image
stacks. It extracts different parameters such as volume total intensity, in the
whole cell as well as in the nuclear and cytoplasmic compartments.
......@@ -5,8 +14,10 @@ whole cell as well as in the nuclear and cytoplasmic compartments.
This package has been generated by adapting the segmentation and parmeter
extraction pipeline from CAI and Hossain et al., Nature 2018.
Author: M. Julius Hossain, EMBL Heidelberg.
# How to run
Set the running options and default parameters in fn_running_options.m file
and execute ls_segment_landmarks_main.m file.
To run the package please set the running options and default parameters in
fn_running_options.m file and execute ls_segment_landmarks_main.m file.
\ No newline at end of file
# Author
M. Julius Hossain, EMBL Heidelberg.
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