Commit cf6ca18c authored by M. Julius Hossain's avatar M. Julius Hossain

Merge branch 'patch-1' into 'master'

Update README.md

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# Source code assoicated with the article Cattaglio et al., Biorxiv, 2018
# Source code associated with the article Cattoglio et al., Biorxiv, 2018
>**Architectural Features of 3D Genome Organization Revealed by Counting CTCF and
Cohesin Molecules** Claudia Cattoglio, Iryna Pustova, Jaclyn J Ho, Carla J Inouye, Gina M Dailey,
......@@ -7,17 +6,17 @@ Xavier Darzacq, Robert Tjian, Anders S Hansen
doi: https://doi.org/10.1101/370650
## Functionality
This code package segments lanmarks: cell and nuclear volumes from confocal image
stacks. It extracts different parameters such as volume total intensity, in the
This code package segments landmarks: cell and nuclear volumes from confocal image
stacks. It extracts different parameters such as the total intensity in the
whole cell as well as in the nuclear and cytoplasmic compartments.
This package has been generated by adapting the segmentation and parmeter
extraction pipeline from CAI and Hossain et al., Nature 2018.
This package was generated by adapting the segmentation and parameter
extraction pipeline from Cai and Hossain et al., Nature, 2018.
# How to run
Set the running options and default parameters in fn_running_options.m file
and execute ls_segment_landmarks_main.m file.
Set the running options and default parameters in the fn_running_options.m file
and execute the ls_segment_landmarks_main.m file.
# Author
M. Julius Hossain, EMBL Heidelberg.
M. Julius Hossain, EMBL Heidelberg, 2018.
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