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grp-ellenberg
Genome_organization_cattoglio_2019
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cf6ca18c
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cf6ca18c
authored
Jan 17, 2019
by
M. Julius Hossain
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Merge branch 'patch-1' into 'master'
Update README.md See merge request
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# Source code assoicated with the article Cattaglio et al., Biorxiv, 2018
# Source code associated with the article Cattoglio et al., Biorxiv, 2018
>**Architectural Features of 3D Genome Organization Revealed by Counting CTCF and
Cohesin Molecules
**
Claudia Cattoglio, Iryna Pustova, Jaclyn J Ho, Carla J Inouye, Gina M Dailey,
...
...
@@ -7,17 +6,17 @@ Xavier Darzacq, Robert Tjian, Anders S Hansen
doi: https://doi.org/10.1101/370650
## Functionality
This code package segments lanmarks: cell and nuclear volumes from confocal image
stacks. It extracts different parameters such as
volum
e total intensity
,
in the
This code package segments lan
d
marks: cell and nuclear volumes from confocal image
stacks. It extracts different parameters such as
th
e total intensity in the
whole cell as well as in the nuclear and cytoplasmic compartments.
This package
h
as
been
generated by adapting the segmentation and parmeter
extraction pipeline from C
AI
and Hossain et al., Nature 2018.
This package
w
as generated by adapting the segmentation and par
a
meter
extraction pipeline from C
ai
and Hossain et al., Nature
,
2018.
# How to run
Set the running options and default parameters in fn_running_options.m file
and execute ls_segment_landmarks_main.m file.
Set the running options and default parameters in
the
fn_running_options.m file
and execute
the
ls_segment_landmarks_main.m file.
# Author
M. Julius Hossain, EMBL Heidelberg.
M. Julius Hossain, EMBL Heidelberg
, 2018
.
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