diff --git a/src/galaxy/je-demultiplex-illu.xml b/src/galaxy/je-demultiplex-illu.xml index ed40ee3f296f32d806a1a27c5cc926f1db84debf..2ba65332d08d196c0a7d06e27cf042d1ebd70b3a 100644 --- a/src/galaxy/je-demultiplex-illu.xml +++ b/src/galaxy/je-demultiplex-illu.xml @@ -95,7 +95,8 @@ - + + @@ -123,6 +124,7 @@ Input files are fastq files, and can be in gzip compressed format. Author: Charles Girardot (charles.girardot@embl.de). Wrapper by: Jelle Scholtalbers (jelle.scholtalbers@embl.de). +With contributions by: Mehmet Tekman (@mtekman) ------ diff --git a/src/galaxy/je-demultiplex.xml b/src/galaxy/je-demultiplex.xml index 60df4a08e5549cfdc959984fd350232d118dedd3..17ba42deef2f1f4614eee875b0c9bccdff49eaf5 100644 --- a/src/galaxy/je-demultiplex.xml +++ b/src/galaxy/je-demultiplex.xml @@ -60,7 +60,8 @@ - + + @@ -75,11 +76,11 @@ - - + + @@ -101,7 +102,6 @@ - @@ -133,6 +133,7 @@ Input files are fastq files, and can be in gzip compressed format. Author: Charles Girardot (charles.girardot@embl.de). Wrapper by: Jelle Scholtalbers (jelle.scholtalbers@embl.de). +With contributions by: Mehmet Tekman (@mtekman) ------ diff --git a/src/galaxy/macros.xml b/src/galaxy/macros.xml index 381e5c917c3a9959051e5dec0008672f09c2766a..fe5972801ba842b3afcacc8033d8f4e1bbbd4009 100644 --- a/src/galaxy/macros.xml +++ b/src/galaxy/macros.xml @@ -1,6 +1,6 @@ - 1.2 + 1.2.1 je-suite @@ -278,21 +278,19 @@ ${from_text_area} - KEEP_UNASSIGNED_READ=$KEEP_UNASSIGNED_READ - STATS_ONLY=${adv_options.STATS_ONLY} - #if str( $adv_options.DIAG ) == "true": + KEEP_UNASSIGNED_READ=${KEEP_UNASSIGNED_READ} + STATS_ONLY=${STATS_ONLY} + #if str( $DIAG ) == "true": BARCODE_DIAG_FILE=$BARCODE_DIAG_FILE #end if - - - -
+ + + -
+
@@ -335,22 +333,22 @@ ${from_text_area} METRICS_FILE_NAME=$METRICS_FILE_NAME - + - - COLLECT_OUTPUTS == False - + + - (adv_options['DIAG'] == 'true') + DIAG - COLLECT_OUTPUTS + COLLECT_OUTPUTS and STATS_ONLY == False - COLLECT_OUTPUTS + COLLECT_OUTPUTS and STATS_ONLY == False