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GBCS
Je
Commits
1ff31085
Commit
1ff31085
authored
Jul 31, 2017
by
Charles Girardot
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corrected a case wher ambigous reads were still kept.
parent
59a47500
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1
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src/main/java/org/embl/gbcs/je/jemultiplexer/Jemultiplexer.java
...in/java/org/embl/gbcs/je/jemultiplexer/Jemultiplexer.java
+5
-4
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src/main/java/org/embl/gbcs/je/jemultiplexer/Jemultiplexer.java
View file @
1ff31085
...
...
@@ -772,10 +772,11 @@ public class Jemultiplexer extends AbstractJemultiplexer {
chosen_sample
=
spl1
;
}
else
{
//look int delta
if
(
bc1
.
mismatchesToSecondBest
!=
bc2
.
mismatchesToSecondBest
){
chosen_sample
=
bc1
.
mismatchesToSecondBest
>
bc2
.
mismatchesToSecondBest
?
spl1:
spl2
;
}
//look int delta : we don t do this anymore in v1.2
// this was a bug as it always resolve to the same sample when barcodes have no mismatches (see above)
// if(bc1.mismatchesToSecondBest!=bc2.mismatchesToSecondBest){
// chosen_sample = bc1.mismatchesToSecondBest>bc2.mismatchesToSecondBest? spl1:spl2;
// }
}
}
}
...
...
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