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GBCS
Je
Commits
76daf3b2
Commit
76daf3b2
authored
Jul 31, 2017
by
Charles Girardot
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updated doc to reflect the code change
parent
7d09e602
Changes
4
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5 additions
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3 deletions
+5
-3
.classpath
.classpath
+2
-2
.gitignore
.gitignore
+1
-0
dist/je_1.2_bundle.jar
dist/je_1.2_bundle.jar
+0
-0
src/main/java/org/embl/gbcs/je/jemultiplexer/AbstractJemultiplexer.java
...org/embl/gbcs/je/jemultiplexer/AbstractJemultiplexer.java
+2
-1
No files found.
.classpath
View file @
76daf3b2
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry
kind=
"src"
output=
"target/classes"
path=
"src/main/java"
>
<classpathentry
including=
"**/*.java"
kind=
"src"
output=
"target/classes"
path=
"src/main/java"
>
<attributes>
<attribute
name=
"optional"
value=
"true"
/>
<attribute
name=
"maven.pomderived"
value=
"true"
/>
...
...
@@ -27,7 +27,7 @@
<attribute
name=
"maven.pomderived"
value=
"true"
/>
</attributes>
</classpathentry>
<classpathentry
kind=
"con"
path=
"org.eclipse.jdt.launching.JRE_CONTAINER"
>
<classpathentry
kind=
"con"
path=
"org.eclipse.jdt.launching.JRE_CONTAINER
/org.eclipse.jdt.internal.launching.macosx.MacOSXType/Java 1.7.0
"
>
<attributes>
<attribute
name=
"maven.pomderived"
value=
"true"
/>
</attributes>
...
...
.gitignore
View file @
76daf3b2
...
...
@@ -4,3 +4,4 @@ bin
target/
.DS_Store
._*
embl.properties
dist/je_1.2_bundle.jar
View file @
76daf3b2
No preview for this file type
src/main/java/org/embl/gbcs/je/jemultiplexer/AbstractJemultiplexer.java
View file @
76daf3b2
...
...
@@ -173,7 +173,8 @@ public abstract class AbstractJemultiplexer extends CommandLineProgram {
+
" When true and if only one of the two reads has a barcode match, the read pair is 'unassigned'.\n"
+
" When false and if only one of the two reads has a barcode match, the read pair is assigned to the\n"
+
" corresponding sample\n"
+
"When reads resolve to different samples, the read pair is always 'unassigned'.\n"
+
"When false and reads resolve to different samples, the read pair with the lowest mismatch is chosen\n "
+
"(read pair is 'unassigned' in case of mismatch equality).\n"
)
public
boolean
STRICT
=
false
;
...
...
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