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GBCS
Je
Commits
b6e20b85
Commit
b6e20b85
authored
Jul 16, 2018
by
Charles Girardot
Browse files
bug fix
parent
9bdeeacb
Changes
2
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src/main/java/org/embl/gbcs/je/jemultiplexer/JemultiplexerIllumina.java
View file @
b6e20b85
...
...
@@ -646,7 +646,7 @@ public class JemultiplexerIllumina extends AbstractJemultiplexer {
if
(
INDEX_FILE2
.
getAbsolutePath
().
equals
(
FASTQ_FILE1
.
getAbsolutePath
()))
messages
.
add
(
"FASTQ_FILE1 and INDEX_FILE2 are the same file !"
);
if
(
INDEX_FILE2
.
getAbsolutePath
().
equals
(
FASTQ_FILE2
.
getAbsolutePath
()))
if
(
RUNNING_PAIRED_END
&&
INDEX_FILE2
.
getAbsolutePath
().
equals
(
FASTQ_FILE2
.
getAbsolutePath
()))
messages
.
add
(
"FASTQ_FILE2 and INDEX_FILE2 are the same file !"
);
...
...
src/main/resources/log4j.xml
deleted
100644 → 0
View file @
9bdeeacb
<?xml version="1.0" encoding="UTF-8" ?>
<!DOCTYPE log4j:configuration SYSTEM "log4j.dtd">
<log4j:configuration
xmlns:log4j=
"http://jakarta.apache.org/log4j/"
>
<appender
name=
"CONSOLE"
class=
"org.apache.log4j.ConsoleAppender"
>
<layout
class=
"org.apache.log4j.PatternLayout"
>
<param
name=
"ConversionPattern"
value=
"%d{dd-MM-yy HH:mm:ss} %-5p [%t] %c{1}.%M(%L) | %m%n"
/>
</layout>
</appender>
<root>
<level
value=
"${log.level}"
/>
<appender-ref
ref=
"CONSOLE"
/>
</root>
</log4j:configuration>
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