Commit b6e20b85 authored by Charles Girardot's avatar Charles Girardot

bug fix

parent 9bdeeacb
...@@ -646,7 +646,7 @@ public class JemultiplexerIllumina extends AbstractJemultiplexer { ...@@ -646,7 +646,7 @@ public class JemultiplexerIllumina extends AbstractJemultiplexer {
if(INDEX_FILE2.getAbsolutePath().equals(FASTQ_FILE1.getAbsolutePath())) if(INDEX_FILE2.getAbsolutePath().equals(FASTQ_FILE1.getAbsolutePath()))
messages.add("FASTQ_FILE1 and INDEX_FILE2 are the same file !"); messages.add("FASTQ_FILE1 and INDEX_FILE2 are the same file !");
if(INDEX_FILE2.getAbsolutePath().equals(FASTQ_FILE2.getAbsolutePath())) if(RUNNING_PAIRED_END && INDEX_FILE2.getAbsolutePath().equals(FASTQ_FILE2.getAbsolutePath()))
messages.add("FASTQ_FILE2 and INDEX_FILE2 are the same file !"); messages.add("FASTQ_FILE2 and INDEX_FILE2 are the same file !");
......
<?xml version="1.0" encoding="UTF-8" ?>
<!DOCTYPE log4j:configuration SYSTEM "log4j.dtd">
<log4j:configuration xmlns:log4j="http://jakarta.apache.org/log4j/">
<appender name="CONSOLE" class="org.apache.log4j.ConsoleAppender">
<layout class="org.apache.log4j.PatternLayout">
<param name="ConversionPattern" value="%d{dd-MM-yy HH:mm:ss} %-5p [%t] %c{1}.%M(%L) | %m%n" />
</layout>
</appender>
<root>
<level value="${log.level}" />
<appender-ref ref="CONSOLE" />
</root>
</log4j:configuration>
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