Commits · 8391dc2d0b797a9a8e9983f9a341be9fb7ba7a9f · GBCS / Je

31 Jul, 2017 4 commits
- removed the dropseq command as it is not ready yet · 8391dc2d
  Charles Girardot authored Jul 31, 2017
  
  8391dc2d
- versino 1.2 · 66eddf6f
  Charles Girardot authored Jul 31, 2017
  
  66eddf6f
- Add new file · 328520b7
  Charles Girardot authored Jul 31, 2017
  
  328520b7
- corrected a case wher ambigous reads were still kept. · 1ff31085
  Charles Girardot authored Jul 31, 2017
  
  1ff31085
21 Jun, 2017 1 commit
- update galaxy wrappers to release_1.1 · 59a47500
  Jelle Scholtalbers authored Jun 21, 2017
  
  59a47500
20 Jun, 2017 2 commits
- prepare for release 1.1 · dd9e62bd
  Charles Girardot authored Jun 20, 2017
  
  dd9e62bd
- Merge branch 'master' of git.embl.de:grp-gbcs/Je · f10d7e08
  Charles Girardot authored Jun 20, 2017
  
  f10d7e08
24 May, 2017 4 commits
- refact · 1c14c1ec
  Charles Girardot authored May 24, 2017
  
  1c14c1ec
- refact · 69cfc6c8
  Charles Girardot authored May 24, 2017
  
  69cfc6c8
- made code more robust · 304ba45a
  Charles Girardot authored May 24, 2017
  
  304ba45a
- corrected bug in which UMI was not added to header in demultiplex-illu · 055e7ce6
  Charles Girardot authored May 24, 2017
```
SE mode
```
  055e7ce6
08 Dec, 2016 1 commit
- Update README.rst · 54ad8be9
  Jelle Scholtalbers authored Dec 08, 2016
  
  54ad8be9
07 Dec, 2016 3 commits
- added basic readme for planemo usage · 697b4ef9
  Jelle Scholtalbers authored Dec 07, 2016
  
  697b4ef9
- make tests pass again · 62411561
  Jelle Scholtalbers authored Dec 07, 2016
  
  62411561
- update je-clip.xml wrapper to fix some bugs; plus add the custom format gz for our convenience · 559113a9
  Jelle Scholtalbers authored Dec 07, 2016
  
  559113a9
08 Sep, 2016 1 commit
- added new module for Drop-seq support. This 'dropseq' clips barcode and · 6d127999
  Charles Girardot authored Sep 08, 2016
```
UMI from read 1 and adds them to read2 headers
```
  6d127999
30 Nov, 2015 2 commits
- Merge branch 'master' of git.embl.de:grp-gbcs/Je · e1bdeefc
  Charles Girardot authored Nov 30, 2015
  
  e1bdeefc
- minor doc · ce8607fc
  Charles Girardot authored Nov 30, 2015
  
  ce8607fc
26 Nov, 2015 1 commit
- use _JAVA_OPTIONS to set default memory limit · 8a5a7a5e
  Jelle Scholtalbers authored Nov 26, 2015
  
  8a5a7a5e
25 Nov, 2015 11 commits
- updated for toolshed suite using auto_tool_repositories · 726a49b2
  Jelle Scholtalbers authored Nov 25, 2015
  
  726a49b2
- galaxy wrapper updates · 58a5df4f
  Jelle Scholtalbers authored Nov 25, 2015
  
  58a5df4f
- pointed to the embl bundle , now correct · 8989f33b
  Charles Girardot authored Nov 25, 2015
  
  8989f33b
- Merge branch 'master' of git.embl.de:grp-gbcs/Je · a6231031
  Charles Girardot authored Nov 25, 2015
  
  a6231031
- change to INFO level by default · a7cc9998
  Charles Girardot authored Nov 25, 2015
  
  a7cc9998
- set jar to INFO logging level by default and added log4.xml for custom · 2ddd849a
  Charles Girardot authored Nov 25, 2015
```
logging (also reflected in shell je)
```
  2ddd849a
- improved · 1c2a0217
  Charles Girardot authored Nov 25, 2015
  
  1c2a0217
- dist dir · 820f26f8
  Charles Girardot authored Nov 25, 2015
  
  820f26f8
- created the dist directory hosting the official Je releases · e0b4a180
  Charles Girardot authored Nov 25, 2015
  
  e0b4a180
- more in readme · d40fef94
  Charles Girardot authored Nov 25, 2015
  
  d40fef94
- adding deps · 5fd37daf
  Charles Girardot authored Nov 25, 2015
  
  5fd37daf
23 Nov, 2015 5 commits
- can be seen by everyone · 0d973af3
  Charles Girardot authored Nov 23, 2015
  
  0d973af3
- help · f3dd5c70
  Charles Girardot authored Nov 23, 2015
  
  f3dd5c70
- replace with templates · f07d4740
  Charles Girardot authored Nov 23, 2015
  
  f07d4740
- ignoring files with pwd · 95d315e2
  Charles Girardot authored Nov 23, 2015
  
  95d315e2
- initial recommit in gbcs repos · c099f62d
  Charles Girardot authored Nov 23, 2015
  
  c099f62d