Commit 59a47500 authored by Jelle Scholtalbers's avatar Jelle Scholtalbers 🇳🇱

update galaxy wrappers to release_1.1

parent dd9e62bd
......@@ -15,5 +15,5 @@ Look at the result and then update the main toolshed.
## Update toolshed
``planemo shed_update``
``planemo shed_update --shed_target toolshed``
<tool id="je_clip" name="Je-Clip" version="1.0">
<tool id="je_clip" name="Je-Clip" version="@VERSION_STRING@">
<description>clips Unique Molecular Identifiers (UMIs) from fastq files</description>
<macros>
<import>macros.xml</import>
......
<tool id="je_demultiplex_illu" name="Je-Demultiplex-Illu" version="1.0">
<tool id="je_demultiplex_illu" name="Je-Demultiplex-Illu" version="@VERSION_STRING@">
<description>demultiplexes fastq files using Illumina Index file</description>
<macros>
<import>macros.xml</import>
......
<tool id="je_demultiplex" name="Je-Demultiplex" version="1.0">
<tool id="je_demultiplex" name="Je-Demultiplex" version="@VERSION_STRING@">
<description>demultiplexes fastq files</description>
<macros>
<import>macros.xml</import>
......
<tool id="je_markdupes" name="Je-MarkDuplicates" version="1.0">
<tool id="je_markdupes" name="Je-MarkDuplicates" version="@VERSION_STRING@">
<description>to filter BAM files for read duplicates taking UMIs into account</description>
<macros>
<import>macros.xml</import>
......
<macros>
<token name="@VERSION_STRING@">1.1</token>
<token name="@single_or_paired_cmd@">
#if str( $library.type ) == "single":
F1=${library.input_1}
......
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