Commit 66eddf6f authored by Charles Girardot's avatar Charles Girardot

versino 1.2

parent 328520b7
* Version 1.0 is as published in BMC Bioinformatics 17(1) doi: 10.1186/s12859-016-1284-2
* Version 1.1 : bug correction in header writing in paired end mode with ENSURE_IDENTICAL_HEADER_NAMES=true
* Version 1.2 : change the logic of sample selection in PE when barcodes are identical AND redundant AND in the
rare situation where barcodes resolve to 2 different samples with no mismatch in both cases. In this situation,
the code *potentially* assigned the read to the same sample. To avoid this is the future, the read is now
* Version 1.2 : change the logic of sample selection in PE when barcodes are present in both reads and redundant.
In the rare situation where barcode matching resolve to 2 **different** samples with no mismatch in both cases,
the code *could* assign the PE reads always to the same sample. To avoid this is the future, the PE reads are now
unassigned in this very special situation.
\ No newline at end of file
......@@ -3,7 +3,7 @@
<modelVersion>4.0.0</modelVersion>
<groupId>Je</groupId>
<artifactId>Je</artifactId>
<version>1.1</version>
<version>1.2</version>
<name>Je</name>
<description>Je provides command line utilities to deal with barcoded FASTQ files with or without Unique Molecular Index (UMI)</description>
......
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