Commit 76daf3b2 authored by Charles Girardot's avatar Charles Girardot

updated doc to reflect the code change

parent 7d09e602
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="src" output="target/classes" path="src/main/java">
<classpathentry including="**/*.java" kind="src" output="target/classes" path="src/main/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
......@@ -27,7 +27,7 @@
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER">
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.launching.macosx.MacOSXType/Java 1.7.0">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
......
......@@ -4,3 +4,4 @@ bin
target/
.DS_Store
._*
embl.properties
No preview for this file type
......@@ -173,7 +173,8 @@ public abstract class AbstractJemultiplexer extends CommandLineProgram {
+" When true and if only one of the two reads has a barcode match, the read pair is 'unassigned'.\n"
+" When false and if only one of the two reads has a barcode match, the read pair is assigned to the\n"
+" corresponding sample\n"
+ "When reads resolve to different samples, the read pair is always 'unassigned'.\n"
+ "When false and reads resolve to different samples, the read pair with the lowest mismatch is chosen\n "
+ "(read pair is 'unassigned' in case of mismatch equality).\n"
)
public boolean STRICT = false;
......
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