DESCRIPTION 857 Bytes
Newer Older
1 2 3
Package: DEWSeq
Type: Package
Title: Differential Expressed Windows Based on Negative Binomial Distribution
4 5
Version: 0.99.0
Author: Sudeep Sahadevan <sahadeva@embl.de>, Thomas Schwarzl <schwarzl@embl.de>
6
Maintainer: Hentze bioinformatics team <biohentze@embl.de>
Sudeep Sahadevan's avatar
Sudeep Sahadevan committed
7
Description: Differential expression analysis of windows for next-generation sequencing data like eCLIP or iCLIP data.
8
Imports:
9
    BiocGenerics,
10
    data.table(>= 1.11.8),
11 12
    GenomeInfoDb,
    GenomicRanges,
13 14 15
    methods,
    S4Vectors,
    SummarizedExperiment,
Sudeep Sahadevan's avatar
Sudeep Sahadevan committed
16
    stats,
17 18 19
    utils
Depends:
    DESeq2,
Sudeep Sahadevan's avatar
Sudeep Sahadevan committed
20
    BiocParallel
21
Suggests:
Sudeep Sahadevan's avatar
Sudeep Sahadevan committed
22
    knitr,  
Sudeep Sahadevan's avatar
Sudeep Sahadevan committed
23
    rmarkdown
24 25
VignetteBuilder:
    knitr
Sudeep Sahadevan's avatar
Sudeep Sahadevan committed
26
biocViews: Sequencing,
Sudeep Sahadevan's avatar
Sudeep Sahadevan committed
27 28
    GeneRegulation,
    FunctionalGenomics,
Sudeep Sahadevan's avatar
Sudeep Sahadevan committed
29
    DifferentialExpression
30 31 32 33 34
License: LGPL (>= 3)
URL: https://git.embl.de/biohentze/DEWSeq
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1