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Package: DEWSeq
Type: Package
Title: Differential Expressed Windows Based on Negative Binomial Distribution
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Version: 0.99.2
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Author: Sudeep Sahadevan <sahadeva@embl.de>, Thomas Schwarzl <schwarzl@embl.de>
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Maintainer: Hentze bioinformatics team <biohentze@embl.de>
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Description: Differential expression analysis of windows for next-generation sequencing data like eCLIP or iCLIP data.
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Imports:
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    BiocGenerics,
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    data.table(>= 1.11.8),
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    GenomeInfoDb,
    GenomicRanges,
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    methods,
    S4Vectors,
    SummarizedExperiment,
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    stats,
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    utils
Depends:
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    R(>= 3.6.0),
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    DESeq2,
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    BiocParallel
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Suggests:
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    knitr,  
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    rmarkdown,
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    testthat,
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    BiocStyle
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VignetteBuilder:
    knitr
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biocViews: Sequencing,
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    GeneRegulation,
    FunctionalGenomics,
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    DifferentialExpression
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License: LGPL (>= 3)
URL: https://git.embl.de/biohentze/DEWSeq
Encoding: UTF-8
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LazyData: false
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RoxygenNote: 6.1.1
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BugReports: https://github.com/EMBL-Hentze-group/DEWSeq/issues