Commit d8e35889 authored by Sudeep Sahadevan's avatar Sudeep Sahadevan

adding news, changing vignette

parent 8115df2c
......@@ -33,4 +33,6 @@ biocViews: Sequencing,
License: LGPL (>= 3)
URL: https://git.embl.de/biohentze/DEWSeq
Encoding: UTF-8
LazyData: false
RoxygenNote: 6.1.1
BugReports: https://github.com/EMBL-Hentze-group/DEWSeq/issues
Changes in version 0.99.0 (2019-09-23)
+ Submitted to Bioconductor
......@@ -125,14 +125,6 @@ positions which might be the result of many heuristic events. These are describe
in the next chapter.
We need the following packages for the rest of this vignette
```{r libs, message=FALSE}
library("IHW")
library("tidyverse")
```
## The idea behind DEWSeq
### Understanding the signal
......@@ -427,12 +419,25 @@ filter the annotation before flattening it.
DEWSeq uses a sliding window approach with DESeq2 for enriched binding sites.
## Installation
DEWSeq can be installed from Bioconductor as follows:
```{r install, eval = FALSE}
if(!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DEWSeq")
```
## Load the library
First step is to load the library with this command
First step is to load the required libraries with this command
```{r load library, eval = TRUE}
require(DEWSeq)
require(IHW)
require(tidyverse)
```
## Importing data for DEWSeq
......
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