Commits · 37b9f2d840b6ca94fd2813b58bde0903e9115054 · Zaugg Group / GRaNIE · GitLab

25 May, 2021 1 commit
- GRN: Updated from GRNdev, major Vignette updates · 37b9f2d8
  Christian Arnold authored May 25, 2021
  
  37b9f2d8
23 May, 2021 3 commits
- GRNdev: Updated figures and removed warning explanation in Vignette · 919c9e67
  Christian Arnold authored May 23, 2021
  
  919c9e67
- Bugfix for peak gene correlation and namespace correction · 325479d7
  Christian Arnold authored May 23, 2021
  
  325479d7
- Minor changes, correctly saving version of object · 670ed318
  Christian Arnold authored May 23, 2021
  
  670ed318
21 May, 2021 1 commit
- Improved peak-gene diagnostic plots · 86bbb007
  Christian Arnold authored May 21, 2021
  
  86bbb007
20 May, 2021 4 commits
- Change for IHW and handling an edge case when some raw p-values are NA · ff95d1bf
  Christian Arnold authored May 20, 2021
  
  ff95d1bf
- Change for IHW and handling an edge case when some raw p-values are NA · c7e3b8ae
  Christian Arnold authored May 20, 2021
  
  c7e3b8ae
- Change for IHW and handling an edge case when some raw p-values are NA · bdf5d8b9
  Christian Arnold authored May 20, 2021
  
  bdf5d8b9
- Change for IHW and handling an edge case when some raw p-values are NA · d240b321
  Christian Arnold authored May 20, 2021
  
  d240b321
17 May, 2021 4 commits
- Bugfix release for GRN package, fixes issue for edge cases when sd = 0 for peaks · f8a5c27e
  Christian Arnold authored May 17, 2021
  
  f8a5c27e
- Merge branch 'master' of git.embl.de:grp-zaugg/grn · 60d20ee1
  Christian Arnold authored May 17, 2021
```
Merge Rim's newly added feature of checking peak overlaps
```
  60d20ee1
- core update before merging Rims changes · a8cec26c
  Christian Arnold authored May 17, 2021
  
  a8cec26c
- Merge branch 'overlapping-peak-fix' into 'master' · 760bd549
  Christian Arnold authored May 17, 2021
```
Return an error if consensus peaks overlap

See merge request grp-zaugg/grn!2
```
  760bd549
14 May, 2021 1 commit
- Return an error if consensus peaks overlap · df53e2d5
  Rim Moussa authored May 14, 2021
  
  df53e2d5
10 May, 2021 3 commits
- Updated version in DESCRIPTION · 9742e931
  Christian Arnold authored May 10, 2021
  
  9742e931
- Updated version in DESCRIPTION · 95009b58
  Christian Arnold authored May 10, 2021
  
  95009b58
- Small bug fix for genes with 0 variation · 1e883889
  Christian Arnold authored May 10, 2021
  
  1e883889
07 May, 2021 9 commits
- Updated GRN stable version to 0.8 · fa77797a
  Christian Arnold authored May 07, 2021
  
  fa77797a
- Vignette and News update · 012dcae1
  Christian Arnold authored May 07, 2021
  
  012dcae1
- Minor · a2fd6b79
  Christian Arnold authored May 07, 2021
  
  a2fd6b79
- Minor · 94216264
  Christian Arnold authored May 07, 2021
  
  94216264
- Minor · 0449ccfa
  Christian Arnold authored May 07, 2021
  
  0449ccfa
- Minor · 4c40c260
  Christian Arnold authored May 07, 2021
  
  4c40c260
- Updated .gitignore · aff3b15a
  Christian Arnold authored May 07, 2021
  
  aff3b15a
- Minor issues · 540e17a6
  Christian Arnold authored May 07, 2021
  
  540e17a6
- Many small improvements, particulary for PCA plots, internal re-design for config slot etc · ea58f0db
  Christian Arnold authored May 07, 2021
  
  ea58f0db
05 May, 2021 5 commits
- Slight changes to Introductory vignette · 53b25946
  Christian Arnold authored May 05, 2021
  
  53b25946
- Changed root path to be always an absolute path, other small optimizations · e74c489d
  Christian Arnold authored May 05, 2021
  
  e74c489d
- Added log functions, attempt 3 · 1a0821c1
  Christian Arnold authored May 05, 2021
  
  1a0821c1
- Added log functions, attempt 2 · e5af9fd2
  Christian Arnold authored May 05, 2021
  
  e5af9fd2
- Added log functions, attempt 1 and fix unresolved class issue · 386d8c1f
  Christian Arnold authored May 05, 2021
  
  386d8c1f
28 Apr, 2021 1 commit
- Bugfix for the stable version for TF-peak FDR edge case · 2b1f47b7
  Christian Arnold authored Apr 28, 2021
  
  2b1f47b7
27 Apr, 2021 1 commit
- Few bugfixes for edge cases and minor issues · 2f366fb7
  Christian Arnold authored Apr 27, 2021
  
  2f366fb7
31 Mar, 2021 2 commits
- Updated GRN package from GRNdev, integrated IHW for peak-gene p-values, and small other changes · 7fa0eb8c
  Christian Arnold authored Mar 31, 2021
  
  7fa0eb8c
- Update .gitlab-ci.yml file: Changed from GRNdev to GRN for documentation · 97f1906e
  Christian Arnold authored Mar 31, 2021
  
  97f1906e
24 Mar, 2021 5 commits
- Restored TFBS files, finished cleaning of repo · 29c2eb81
  Christian Arnold authored Mar 24, 2021
  
  29c2eb81
- Cleaned repo, removed unnecessary files · a2b19214
  Christian Arnold authored Mar 24, 2021
  
  a2b19214
- Cleaned repo, removed unnecessary files · 640bd75a
  Christian Arnold authored Mar 24, 2021
  
  640bd75a
- Cleaned repo, removed unnecessary files · fe655c84
  Christian Arnold authored Mar 24, 2021
  
  fe655c84
- Added pngs of PDF output, minor vignette changes · e5cbea07
  Christian Arnold authored Mar 24, 2021
  
  e5cbea07