Commits · 46e702ac3ffbe3f85e611164917cdc61a768a6e8 · Zaugg Group / GRaNIE

14 Dec, 2021 1 commit
- GRaNIE: New version 0.14 · 46e702ac
  Christian Arnold authored Dec 14, 2021
  
  46e702ac
13 Dec, 2021 3 commits
- GRaNIEdev: Resolving all current issues and updated website · 214f1b28
  Christian Arnold authored Dec 13, 2021
  
  214f1b28
- GRaNIEdev: Edge cases for network analyses · b5674148
  Christian Arnold authored Dec 13, 2021
  
  b5674148
- Small bugfixes · 3a32c960
  Christian Arnold authored Dec 13, 2021
  
  3a32c960
07 Dec, 2021 1 commit
- Update README.md · 92196055
  Christian Arnold authored Dec 07, 2021
  
  92196055
06 Dec, 2021 4 commits
- Renamed GRNData package in DECRIPTION file · f8d79cfb
  Christian Arnold authored Dec 06, 2021
  
  f8d79cfb
- Changed URL in README, merging from HUI change · 0ffab2ba
  Christian Arnold authored Dec 06, 2021
  
  0ffab2ba
- GRaNIEdev: Added flexibilit for custom TFBS patterns, thanks to Brian for reporting · ab551fe5
  Christian Arnold authored Dec 06, 2021
  
  ab551fe5
- Update README.md · 91506085
  Christian Arnold authored Dec 06, 2021
  
  91506085
03 Dec, 2021 6 commits
- Update .gitlab-ci.yml file · fb0c7483
  Christian Arnold authored Dec 03, 2021
  
  fb0c7483
- Update .gitlab-ci.yml file · fbbb29a3
  Christian Arnold authored Dec 03, 2021
  
  fbbb29a3
- Renamed packages from GRN to GRaNIE · 0950492d
  Christian Arnold authored Dec 03, 2021
  
  0950492d
- GRNdev: Small changes · 826011ad
  Christian Arnold authored Dec 03, 2021
  
  826011ad
- GRNdev: Small changes to addData to capture some edge cases for missing data... · d66d22da
  Christian Arnold authored Dec 03, 2021
```
GRNdev: Small changes to addData to capture some edge cases for missing data and column names for metadata
```
  d66d22da
- GRNdev:Bioconductor package preparation, code cleanup, post-merge stuff · 62e5fe43
  Christian Arnold authored Dec 03, 2021
  
  62e5fe43
16 Nov, 2021 2 commits
- Merge branch 'documentation-updates' into 'master' · 35e15b26
  Christian Arnold authored Nov 16, 2021
```
Documentation updates

See merge request grp-zaugg/grn!8
```
  35e15b26
- GRNdev: Small updates · ec5c04d3
  Christian Arnold authored Nov 16, 2021
  
  ec5c04d3
03 Nov, 2021 1 commit
- updated documentation + bioconductor tweaks · 1cbfe115
  Rim Moussa authored Nov 03, 2021
  
  1cbfe115
13 Oct, 2021 1 commit
- added tf-based enrichment + other minor changes to the commiunity enrichment and display · 248983d6
  Rim Moussa authored Oct 13, 2021
  
  248983d6
21 Sep, 2021 1 commit
- GRNdev: Bugfix for summary enrichment slot, now it contains all terms and... · 9f570c26
  Christian Arnold authored Sep 21, 2021
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GRNdev: Bugfix for summary enrichment slot, now it contains all terms and distinguishes between ontologies
```
  9f570c26
20 Sep, 2021 1 commit
- GRNdev: Bugfix for AR classification wrapper in combination with TF activity · d74ff741
  Christian Arnold authored Sep 20, 2021
  
  d74ff741
16 Sep, 2021 1 commit
- GRNdev: Small bugfixes and improvements · 4804ed92
  Christian Arnold authored Sep 16, 2021
  
  4804ed92
14 Sep, 2021 1 commit
- Small bugfix for enrichment plotting to prevent terms with the same name after truncating · a235ecef
  Christian Arnold authored Sep 14, 2021
  
  a235ecef
13 Sep, 2021 1 commit
- GRNdev: New version with enrichment analyses & support for multipel TF activity data · 7a3cac1b
  Christian Arnold authored Sep 13, 2021
  
  7a3cac1b
29 Jul, 2021 5 commits
- Merge branch 'master' of git.embl.de:grp-zaugg/grn · a64320e0
  Christian Arnold authored Jul 30, 2021
```
Max work integration
```
  a64320e0
- GRNdev: Continued integration of Max merge request · 4b1edf9f
  Christian Arnold authored Jul 30, 2021
  
  4b1edf9f
- Merge branch 'network-summary' into 'master' · dfc0d7f6
  Christian Arnold authored Jul 29, 2021
```
added display for enrichment analysis

See merge request grp-zaugg/grn!5
```
  dfc0d7f6
- GRNdev: Continued integration of Max merge request · 863274d3
  Christian Arnold authored Jul 30, 2021
  
  863274d3
- added display for enrichment analysis · edc33590
  Rim Moussa authored Jul 29, 2021
  
  edc33590
28 Jul, 2021 1 commit
- GRNdev: Added network functions and plots from Rim · dceb005f
  Christian Arnold authored Jul 28, 2021
  
  dceb005f
27 Jul, 2021 3 commits
- Merge branch 'master' of git.embl.de:grp-zaugg/grn · 7dcda9a9
  Christian Arnold authored Jul 27, 2021
```
Merge Max TF activity import and generalization into master
```
  7dcda9a9
- GRNdev: Added network functions and plots from Rim · 23e886b7
  Christian Arnold authored Jul 27, 2021
  
  23e886b7
- Merge branch 'import_TF_activity' into 'master' · 15bbaa4e
  Christian Arnold authored Jul 27, 2021
```
Import tf activity

See merge request grp-zaugg/grn!4
```
  15bbaa4e
26 Jul, 2021 1 commit

Merge branch 'network-summary' into 'master' · a167573c

Christian Arnold authored Jul 26, 2021

network structure summary + community analysis + enrichment analyses

See merge request grp-zaugg/grn!3

a167573c

21 Jul, 2021 2 commits
- network structure summary + community analysis + enrichment analyses · a69fc833
  Rim Moussa authored Jul 21, 2021
  
  a69fc833
- GRNdev: Small updates and additions to QC plots · 36e74cc4
  Christian Arnold authored Jul 21, 2021
  
  36e74cc4
20 Jul, 2021 1 commit
- Handle multiple TF activities · cecee208
  Maksim Kholmatov authored Jul 20, 2021
  
  cecee208
16 Jul, 2021 3 commits
- GRNdev: Small updates to peak-gene QC · 331e896f
  Christian Arnold authored Jul 16, 2021
  
  331e896f
- GRNdev: Small updates to peak-gene QC · 63029785
  Christian Arnold authored Jul 16, 2021
  
  63029785
- GRNdev: Small updates to peak-gene QC · be46ebdd
  Christian Arnold authored Jul 16, 2021
  
  be46ebdd