Commits · bb09156075c66946aad20dce8b3ee08cdd540aa0 · Zaugg Group / GRaNIE

14 Dec, 2021 3 commits
- Small improvements · bb091560
  Christian Arnold authored Dec 14, 2021
  
  bb091560
- GRaNIEdev: re-uploadec current version · 38e93557
  Christian Arnold authored Dec 14, 2021
  
  38e93557
- GRaNIE: New version 0.14 · 46e702ac
  Christian Arnold authored Dec 14, 2021
  
  46e702ac
03 Dec, 2021 1 commit
- Renamed packages from GRN to GRaNIE · 0950492d
  Christian Arnold authored Dec 03, 2021
  
  0950492d
01 Jun, 2021 1 commit
- GRN: New version 0.10.1 · 52567c8e
  Christian Arnold authored Jun 01, 2021
  
  52567c8e
25 May, 2021 1 commit
- GRN: Updated from GRNdev, major Vignette updates · 37b9f2d8
  Christian Arnold authored May 25, 2021
  
  37b9f2d8
20 May, 2021 1 commit
- Change for IHW and handling an edge case when some raw p-values are NA · d240b321
  Christian Arnold authored May 20, 2021
  
  d240b321
17 May, 2021 1 commit
- Bugfix release for GRN package, fixes issue for edge cases when sd = 0 for peaks · f8a5c27e
  Christian Arnold authored May 17, 2021
  
  f8a5c27e
10 May, 2021 1 commit
- Updated version in DESCRIPTION · 95009b58
  Christian Arnold authored May 10, 2021
  
  95009b58
07 May, 2021 1 commit
- Updated GRN stable version to 0.8 · fa77797a
  Christian Arnold authored May 07, 2021
  
  fa77797a
28 Apr, 2021 1 commit
- Bugfix for the stable version for TF-peak FDR edge case · 2b1f47b7
  Christian Arnold authored Apr 28, 2021
  
  2b1f47b7
31 Mar, 2021 1 commit
- Updated GRN package from GRNdev, integrated IHW for peak-gene p-values, and small other changes · 7fa0eb8c
  Christian Arnold authored Mar 31, 2021
  
  7fa0eb8c
17 Mar, 2021 1 commit
- Renamed directories in src directory to make them consistent with the actual package names · 2838ba52
  Christian Arnold authored Mar 17, 2021
  
  2838ba52
03 Mar, 2021 1 commit
- Bugfix for recently added feature to identify whether a matrix is purely integer · 9dfb3b53
  Christian Arnold authored Mar 03, 2021
  
  9dfb3b53
02 Mar, 2021 2 commits
- Made the addData function more generic by allowing any normalization procedure... · 4b07a07a
  Christian Arnold authored Mar 02, 2021
```
Made the addData function more generic by allowing any normalization procedure to be applied even if input is not raw integer counts.
```
  4b07a07a
- Replaced preprocessCore with a limma implementation so that preprocessCore is... · be0cc48a
  Christian Arnold authored Mar 02, 2021
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Replaced preprocessCore with a limma implementation so that preprocessCore is not needed at all anymore
```
  be0cc48a
09 Feb, 2021 2 commits
- Version 0.6 for stable version, fully implemented all speed improvements from... · 30ab0ce6
  Christian Arnold authored Feb 09, 2021
```
Version 0.6 for stable version, fully implemented all speed improvements from the dev version after testing
```
  30ab0ce6
- First speedup for the FDR procedure for the stable version · a655aaa7
  Christian Arnold authored Feb 09, 2021
  
  a655aaa7
04 Feb, 2021 2 commits
- Stable version: Removed ashr dependency and dplyr version dependencies · c75832eb
  Christian Arnold authored Feb 04, 2021
  
  c75832eb
- Changed min R version to 3.5 for STABLE version · c82c5add
  Christian Arnold authored Feb 04, 2021
  
  c82c5add
03 Feb, 2021 1 commit
- First working package version, small updates · 5658f139
  Christian Arnold authored Feb 03, 2021
  
  5658f139
27 Jan, 2021 1 commit
- Package documentation and minor changes update · 7627f1a4
  Christian Arnold authored Jan 27, 2021
  
  7627f1a4
26 Jan, 2021 1 commit
- Major update, first package version · 470bc84b
  Christian Arnold authored Jan 26, 2021
  
  470bc84b
02 Nov, 2020 1 commit
- Repo update, preliminary package version and version used for running all datasets with · 7c77f1be
  Christian Arnold authored Nov 02, 2020
  
  7c77f1be