Reduce object size for GRN object
-
Sparse matrices for binary matrices (AR classification slot) -
RNA counts: Save only shuffled order for permutation variants -
Save rownames only once and not multiple times -
Identify all intermediate files and add option to delete them -
peak-TF binding matrix -
Annotation field for gene annotation that is stored only once and not once per permutation -
countsNorm slot for ATAC -
annotation consensus peaks vs ATAC$consensusPeaks -
Stats slot -
TF-peak links: Discard high-FDR ones via a parameter