diff --git a/doc/Documentation.pdf b/doc/Documentation.pdf index e412a80d343be1e8e06f9ca1362af6d9d3058c22..58638f6bb17390dccc273a25b8cab26826c6182c 100644 Binary files a/doc/Documentation.pdf and b/doc/Documentation.pdf differ diff --git a/src/R/4.summary1.R b/src/R/4.summary1.R index 8327b92ed6ac675c5109ff8ead199db709e13b72..a5f946d8f6de645021818e9ac67d72c5d7171bfb 100755 --- a/src/R/4.summary1.R +++ b/src/R/4.summary1.R @@ -154,9 +154,9 @@ mode_peaks = mlv(round(peaks.df$D2_l2FC, 2), method = "mfv", na.rm = TRUE) summary.df = summary.df %>% dplyr::mutate( - adj_pvalue = p.adjust(Ttest_pval, method = "fdr"), + pvalue_adj = p.adjust(pvalue_raw, method = "fdr"), Diff_mean = Mean_l2FC - mean (peaks.df$D2_l2FC, na.rm = TRUE), - DiffMedian = Median_l2FC - median(peaks.df$D2_l2FC, na.rm = TRUE), + Diff_median = Median_l2FC - median(peaks.df$D2_l2FC, na.rm = TRUE), Diff_mode = Mode_l2FC - mode_peaks[[1]], Diff_skew = Modeskewness - mode_peaks[[2]]) %>% na.omit(summary.df)