Commit 061c149c authored by Christian Arnold's avatar Christian Arnold

Removed references to circular plot

parent 2d07b090
......@@ -304,7 +304,7 @@ localrules: all,cleanUpLogFiles,filterSexChromosomesAndSortPeaks
rule all:
input:
plots = expand("{dir}/{compType}summary.{plotType}.pdf", dir = FINAL_DIR, compType = compType, plotType = ["circular", "volcano"]),
plots = expand("{dir}/{compType}summary.volcano.pdf", dir = FINAL_DIR, compType = compType),
summaryLogs = LOG_BENCHMARK_DIR + "/" + compType + "all.warnings.log"
......@@ -649,7 +649,7 @@ rule summaryFinal:
summary = FINAL_DIR + "/" + compType + "summary.tsv.gz",
volcanoPlot = FINAL_DIR + "/" + compType + "summary.volcano.pdf",
diagnosticPlots = allDiagnosticFiles,
plotsRDS = FINAL_DIR + "/" + compType + "summary.circular.rds",
plotsRDS = FINAL_DIR + "/" + compType + "summary.plots.rds",
log: expand('{dir}/summaryFinal.R.log', dir = LOG_BENCHMARK_DIR)
message: "{ruleDisplayMessage}Run R script {script_summaryFinal} ..."
threads: 1
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment