Commit 270fc313 authored by Christian Arnold's avatar Christian Arnold
Browse files

Updated cluster configuration profiles

parent 7a9d0e4a
{
"__default__": {
"queue": "1day",
"queue": "htc",
"nCPUs": "{threads}",
"memory": 20000,
"maxTime": "5:00:00",
"name": "{rule}.{wildcards}",
"output": "{rule}.{wildcards}.out",
"error": "{rule}.{wildcards}.err"
},
"intersectPeaksAndPWM": {
"memory": 10000
"checkParameterValidity": {
"memory": 2000,
"maxTime": "1:00:00"
},
"intersectPeaksAndBAM": {
"memory": 5000
},
"sortPWM": {
"queue": "htc",
"memory": 1000
"produceConsensusPeaks": {
"memory": 2000,
"maxTime": "1:00:00"
},
"filterSexChromosomesAndSortPeaks": {
"queue": "htc",
"memory": 1000
"memory": 2000,
"maxTime": "1:00:00"
},
"sortTFBSParallel": {
"memory": 2000,
"maxTime": "1:00:00"
},
"resortBAM": {
"memory": 10000,
"maxTime": "2:00:00"
},
"intersectPeaksAndPWM": {
"memory": 10000,
"maxTime": "2:00:00"
},
"intersectPeaksAndBAM": {
"memory": 10000,
"maxTime": "5:00:00"
},
"intersectTFBSAndBAM": {
"memory": 5000
"memory": 10000,
"maxTime": "5:00:00"
},
"DiffPeaks": {
"memory": 10000,
"maxTime": "5:00:00"
},
"analyzeTF": {
"memory": 15000
"memory": 15000,
"maxTime": "5:00:00"
},
"concatenateMotifsPerm": {
"memory": 2000,
"maxTime": "2:00:00"
},
"calcNucleotideContent": {
"memory": 2000,
"maxTime": "2:00:00"
},
"binningTF": {
"memory": 15000,
"maxTime": "15:00:00"
},
"summaryFinal": {
"memory": 10000,
"maxTime": "2:00:00"
},
"cleanUpLogFiles": {
"memory": 1000,
"maxTime": "0:30:00"
}
}
......@@ -2,27 +2,70 @@
"__default__": {
"queue": "htc",
"nCPUs": "{threads}",
"memory": 10000,
"memory": 5000,
"maxTime": "1:00:00",
"name": "{rule}.{wildcards}",
"output": "{rule}.{wildcards}.out",
"error": "{rule}.{wildcards}.err"
},
"checkParameterValidity": {
"memory": 2000,
"maxTime": "1:00:00"
},
"produceConsensusPeaks": {
"memory": 2000,
"maxTime": "1:00:00"
},
"filterSexChromosomesAndSortPeaks": {
"memory": 2000,
"maxTime": "1:00:00"
},
"sortTFBSParallel": {
"memory": 2000,
"maxTime": "1:00:00"
},
"resortBAM": {
"memory": 5000,
"maxTime": "1:00:00"
},
"intersectPeaksAndPWM": {
"queue": "1day",
"memory": 5000
"memory": 5000,
"maxTime": "1:00:00"
},
"intersectPeaksAndBAM": {
"queue": "1day",
"memory": 5000
"memory": 5000,
"maxTime": "1:00:00"
},
"intersectTFBSAndBAM": {
"memory": 5000,
"maxTime": "1:00:00"
},
"sortPWM": {
"memory": 1000
"DiffPeaks": {
"memory": 5000,
"maxTime": "1:00:00"
},
"filterSexChromosomesAndSortPeaks": {
"memory": 1000
"analyzeTF": {
"memory": 5000,
"maxTime": "1:00:00"
},
"intersectTFBSAndBAM": {
"queue": "1day",
"memory": 5000
"concatenateMotifsPerm": {
"memory": 2000,
"maxTime": "1:00:00"
},
"calcNucleotideContent": {
"memory": 2000,
"maxTime": "1:00:00"
},
"binningTF": {
"memory": 5000,
"maxTime": "1:00:00"
},
"summaryFinal": {
"memory": 5000,
"maxTime": "0:30:00"
},
"cleanUpLogFiles": {
"memory": 1000,
"maxTime": "0:30:00"
}
}
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