Commit 79aa15d2 authored by Christian Arnold's avatar Christian Arnold
Browse files

Updated documentation

parent abdca3c3
......@@ -75,6 +75,14 @@ In addition, the following files are need, all of which we provide already for h
- TF-specific list of TFBS (see :ref:`parameter_dir_TFBS`)
- mapping table (see :ref:`parameter_HOCOMOCO_mapping`)
Lastly, some metadata files are needed that specify diffTF-specific and Snakemake-specific parameters. They are explained in detail in the next sections. If this sounds complicated, don't worry, just take the example analysis, and you will understand within a few minutes what these files are:
- a general configuration file (:ref:`configurationFile`)
- a metadata file for the samples (:ref:`section_metadata`)
- optionally, if run on a cluster, a cluster configuration file (see in particular the Snakemake documentation for details, but we also provide example cluster files as well as Section :ref:`clusterEnvironment`)
.. _configurationFile:
General configuration file
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