Commit a7febce5 authored by Christian Arnold's avatar Christian Arnold

Minor doc update for chapter 1

parent 9542b334
......@@ -13,10 +13,10 @@ diffTF runs on Linux and macOS. The following quick start briefly summarizes the
.. code-block:: Bash
conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
conda install snakemake bedtools samtools subread
conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
conda install snakemake bedtools samtools subread
If conda is not yet installed, follow the `installation instructions <https://conda.io/docs/user-guide/install/index.html>`_. Installation is quick and easy. Make sure to open a new terminal after installation, so that *conda* is available.
......@@ -30,6 +30,20 @@ diffTF runs on Linux and macOS. The following quick start briefly summarizes the
git clone https://git.embl.de/grp-zaugg/diffTF
If you receive an error, *Git* may not be installed on your system. If you run Ubuntu, try the following command:
.. code-block:: Bash
sudo apt-get install git
For macOS, there are multiple ways of installing it. If you already have *Homebrew* (http://brew.sh) installed, simply type:
.. code-block:: Bash
brew install git
Otherwise, consult the internet on how to best install Git for your system.
3. To run the example analysis for 50 TF, simply perform the following steps:
* Change into the ``example/input`` directory within the Git repository
......
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