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Zeller Group
GECCO
Commits
81b2b10c
Commit
81b2b10c
authored
Jul 03, 2021
by
Martin Larralde
Browse files
Remove Tigrfam artifact from the `release.yml` Actions workflow
parent
af67f208
Pipeline
#23868
failed with stages
in 4 minutes and 36 seconds
Changes
3
Pipelines
2
Hide whitespace changes
Inline
Side-by-side
.github/workflows/release.yml
View file @
81b2b10c
...
...
@@ -27,17 +27,13 @@ jobs:
run
:
python setup.py build_data -f -r
-
name
:
Compress Pfam HMM
run
:
gzip -c build/lib/gecco/hmmer/Pfam.h3m > Pfam.h3m.gz
-
name
:
Compress Tigrfam HMM
run
:
gzip -c build/lib/gecco/hmmer/Tigrfam.h3m > Tigrfam.h3m.gz
-
name
:
Upload HMM
uses
:
softprops/action-gh-release@v1
if
:
startsWith(github.ref, 'refs/tags/')
env
:
GITHUB_TOKEN
:
${{ secrets.GITHUB_TOKEN }}
with
:
files
:
|
Pfam.h3m.gz
Tigrfam.h3m.gz
files
:
Pfam.h3m.gz
chandler
:
environment
:
GitHub Releases
...
...
gecco/hmmer/Pfam.ini
View file @
81b2b10c
...
...
@@ -5,4 +5,3 @@ size = 2683
url
=
ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam34.0/Pfam-A.hmm.gz
relabel_with
=
s/(PF
\d
+).
\d
+/
\1
/
md5
=
e56170a43f91cc6afd41b696e045c107
setup.py
View file @
81b2b10c
...
...
@@ -307,8 +307,7 @@ class build_data(setuptools.Command):
leave
=
False
,
)
# download to `output`
nsource
=
0
nwritten
=
0
nsource
=
nwritten
=
0
with
contextlib
.
ExitStack
()
as
ctx
:
dl
=
ctx
.
enter_context
(
pbar
)
src
=
ctx
.
enter_context
(
gzip
.
open
(
dl
))
...
...
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