Commit bc42a4a6 authored by Martin Larralde's avatar Martin Larralde
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Release v0.9.1-alpha3

parent c5a66454
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......@@ -5,10 +5,21 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
## [Unreleased]
[Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha2...master
[Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha3...master
## [v0.9.1-alpha3] - 2022-03-23
[v0.9.1-alpha3]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha2...v0.9.1-alpha3
### Added
- `gecco.model.GeneTable` class to store gene coordinates independently of protein domains.
### Changed
- Refactored implementation of `load` and `dump` methods for `Table` classes into a dedicated base class.
- `gecco run` and `gecco annotate` now output a gene table in addition to the feature and cluster tables.
- `gecco train` expects a gene table instead of a GFF file for the gene coordinates.
## [v0.9.1-alpha2] - 2022-03-23
[v0.9.1-alpha1]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha1...v0.9.1-alpha2
[v0.9.1-alpha2]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha1...v0.9.1-alpha2
### Fixed
- `TypeClassifier.trained` not being able to read unknown types from type tables.
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......@@ -10,4 +10,4 @@ See Also:
__author__ = "Martin Larralde"
__license__ = "GPLv3"
__version__ = "0.9.1-alpha2"
__version__ = "0.9.1-alpha3"
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