Commit c79bc696 authored by Martin Larralde's avatar Martin Larralde
Browse files

Release v0.9.1

parent 40ad5fc4
Pipeline #31858 passed with stages
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......@@ -5,7 +5,14 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
## [Unreleased]
[Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha4...master
[Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1...master
## [v0.9.1] - 2022-04-05
[v0.9.1]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha4...v0.9.1
### Changed
- Make the `genes.tsv` and `features.tsv` table contain all genes even when they come from a contig too short to be processed by the CRF sliding window.
- Replaced the `--force-clusters-tsv` flag with a `--force-tsv` flag to force writing TSV tables even when no genes or clusters were found in `gecco run` or `gecco annotate`.
## [v0.9.1-alpha4] - 2022-03-31
[v0.9.1-alpha4]: https://git.embl.de/grp-zeller/GECCO/compare/v0.9.1-alpha3...v0.9.1-alpha4
......@@ -15,7 +22,7 @@ Retrain internal model with:
$ python -m gecco -vv train --c1 0.4 --c2 0 --select 0.25 --window-size 20 \
-f mibig-2.0.proG2.Pfam-v35.0.features.tsv \
-c mibig-2.0.proG2.clusters.tsv \
-g GECCO-data/data/embeddings/mibig-2.0.proG2.genes.gff \
-g GECCO-data/data/embeddings/mibig-2.0.proG2.genes.tsv \
-o models/v0.9.1-alpha4
```
......
......@@ -10,4 +10,4 @@ See Also:
__author__ = "Martin Larralde"
__license__ = "GPLv3"
__version__ = "0.9.1-alpha4"
__version__ = "0.9.1"
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