updated namespace via roxygen2.

NAMESPACE

@@ -14,6 +14,7 @@ export("pred_matrix<-")
 export(accessSlot)
 export(add.meta.pred)
 export(assoc_param)
+export(association.plot)
 export(associations)
 export(check.associations)
 export(check.confounders)
@@ -54,17 +55,18 @@ export(siamcat.to.maaslin)
 export(summarize.features)
 export(train.model)
 export(validate.data)
+export(volcano.plot)
 export(weight_matrix)
 exportClasses(siamcat)
 import(LiblineaR)
-import(glmnet, except = 'auc')
+import(glmnet)
 import(methods)
-import(mlr)
+import(mlr3)
+import(mlr3learners)
+import(mlr3tuning)
+import(paradox)
 import(phyloseq)
 importFrom(PRROC,pr.curve)
-importFrom(ParamHelpers,makeDiscreteParam)
-importFrom(ParamHelpers,makeNumericParam)
-importFrom(ParamHelpers,makeParamSet)
 importFrom(RColorBrewer,brewer.pal)
 importFrom(RColorBrewer,brewer.pal.info)
 importFrom(beanplot,beanplot)
@@ -110,6 +112,9 @@ importFrom(gridExtra,grid.table)
 importFrom(gridExtra,ttheme_minimal)
 importFrom(infotheo,condentropy)
 importFrom(infotheo,discretize)
+importFrom(infotheo,mutinformation)
+importFrom(lgr,get_logger)
+importFrom(lmerTest,lmer)
 importFrom(matrixStats,colRanks)
 importFrom(matrixStats,rowMaxs)
 importFrom(matrixStats,rowMedians)
@@ -120,6 +125,7 @@ importFrom(pROC,roc)
 importFrom(progress,progress_bar)
 importFrom(scales,alpha)
 importFrom(stats,addmargins)
+importFrom(stats,as.formula)
 importFrom(stats,binomial)
 importFrom(stats,coef)
 importFrom(stats,coefficients)
@@ -127,6 +133,7 @@ importFrom(stats,confint)
 importFrom(stats,cor)
 importFrom(stats,fisher.test)
 importFrom(stats,glm)
+importFrom(stats,lm)
 importFrom(stats,median)
 importFrom(stats,na.omit)
 importFrom(stats,p.adjust)