Commit cf368d89 authored by Jakob Wirbel's avatar Jakob Wirbel
Browse files

updated namespace via roxygen2.

parent c15e496f
...@@ -14,6 +14,7 @@ export("pred_matrix<-") ...@@ -14,6 +14,7 @@ export("pred_matrix<-")
export(accessSlot) export(accessSlot)
export(add.meta.pred) export(add.meta.pred)
export(assoc_param) export(assoc_param)
export(association.plot)
export(associations) export(associations)
export(check.associations) export(check.associations)
export(check.confounders) export(check.confounders)
...@@ -54,17 +55,18 @@ export(siamcat.to.maaslin) ...@@ -54,17 +55,18 @@ export(siamcat.to.maaslin)
export(summarize.features) export(summarize.features)
export(train.model) export(train.model)
export(validate.data) export(validate.data)
export(volcano.plot)
export(weight_matrix) export(weight_matrix)
exportClasses(siamcat) exportClasses(siamcat)
import(LiblineaR) import(LiblineaR)
import(glmnet, except = 'auc') import(glmnet)
import(methods) import(methods)
import(mlr) import(mlr3)
import(mlr3learners)
import(mlr3tuning)
import(paradox)
import(phyloseq) import(phyloseq)
importFrom(PRROC,pr.curve) importFrom(PRROC,pr.curve)
importFrom(ParamHelpers,makeDiscreteParam)
importFrom(ParamHelpers,makeNumericParam)
importFrom(ParamHelpers,makeParamSet)
importFrom(RColorBrewer,brewer.pal) importFrom(RColorBrewer,brewer.pal)
importFrom(RColorBrewer,brewer.pal.info) importFrom(RColorBrewer,brewer.pal.info)
importFrom(beanplot,beanplot) importFrom(beanplot,beanplot)
...@@ -110,6 +112,9 @@ importFrom(gridExtra,grid.table) ...@@ -110,6 +112,9 @@ importFrom(gridExtra,grid.table)
importFrom(gridExtra,ttheme_minimal) importFrom(gridExtra,ttheme_minimal)
importFrom(infotheo,condentropy) importFrom(infotheo,condentropy)
importFrom(infotheo,discretize) importFrom(infotheo,discretize)
importFrom(infotheo,mutinformation)
importFrom(lgr,get_logger)
importFrom(lmerTest,lmer)
importFrom(matrixStats,colRanks) importFrom(matrixStats,colRanks)
importFrom(matrixStats,rowMaxs) importFrom(matrixStats,rowMaxs)
importFrom(matrixStats,rowMedians) importFrom(matrixStats,rowMedians)
...@@ -120,6 +125,7 @@ importFrom(pROC,roc) ...@@ -120,6 +125,7 @@ importFrom(pROC,roc)
importFrom(progress,progress_bar) importFrom(progress,progress_bar)
importFrom(scales,alpha) importFrom(scales,alpha)
importFrom(stats,addmargins) importFrom(stats,addmargins)
importFrom(stats,as.formula)
importFrom(stats,binomial) importFrom(stats,binomial)
importFrom(stats,coef) importFrom(stats,coef)
importFrom(stats,coefficients) importFrom(stats,coefficients)
...@@ -127,6 +133,7 @@ importFrom(stats,confint) ...@@ -127,6 +133,7 @@ importFrom(stats,confint)
importFrom(stats,cor) importFrom(stats,cor)
importFrom(stats,fisher.test) importFrom(stats,fisher.test)
importFrom(stats,glm) importFrom(stats,glm)
importFrom(stats,lm)
importFrom(stats,median) importFrom(stats,median)
importFrom(stats,na.omit) importFrom(stats,na.omit)
importFrom(stats,p.adjust) importFrom(stats,p.adjust)
......
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