Commit d08ee5f9 authored by Jakob Wirbel's avatar Jakob Wirbel
Browse files

import mlr3 and other packages.

parent 44768174
#' @import phyloseq mlr LiblineaR methods #' @import phyloseq mlr3 mlr3learners mlr3tuning methods paradox
#' @rawNamespace import(glmnet, except = 'auc') #' glmnet LiblineaR
#' @importFrom grDevices col2rgb colorRampPalette dev.off gray pdf rgb #' @importFrom grDevices col2rgb colorRampPalette dev.off gray pdf rgb
#' @importFrom graphics abline arrows axis barplot box strheight strwidth #' @importFrom graphics abline arrows axis barplot box strheight strwidth
#' boxplot grid image layout lines mtext hist points stripchart #' boxplot grid image layout lines mtext hist points stripchart
#' par plot plot.new polygon rect text title segments legend symbols #' par plot plot.new polygon rect text title segments legend symbols
#' @importFrom stats coefficients cor median p.adjust rnorm qqplot #' @importFrom stats coefficients cor median p.adjust rnorm qqplot
#' predict quantile runif sd wilcox.test addmargins na.omit #' predict quantile runif sd wilcox.test addmargins na.omit
#' fisher.test binomial coef confint glm profile #' fisher.test binomial coef confint glm profile lm as.formula
#' @importFrom utils head read.table tail #' @importFrom utils head read.table tail
#' @importFrom PRROC pr.curve #' @importFrom PRROC pr.curve
#' @importFrom pROC roc #' @importFrom pROC roc
#' @importFrom beanplot beanplot #' @importFrom beanplot beanplot
#' @importFrom RColorBrewer brewer.pal brewer.pal.info #' @importFrom RColorBrewer brewer.pal brewer.pal.info
#' @importFrom ParamHelpers makeParamSet makeDiscreteParam makeNumericParam
#' @importFrom grid popViewport pushViewport plotViewport #' @importFrom grid popViewport pushViewport plotViewport
#' @importFrom gridBase baseViewports #' @importFrom gridBase baseViewports
#' @importFrom gridExtra ttheme_minimal grid.table #' @importFrom gridExtra ttheme_minimal grid.table
...@@ -21,8 +20,10 @@ ...@@ -21,8 +20,10 @@
#' @importFrom scales alpha #' @importFrom scales alpha
#' @importFrom utils write.table read.csv askYesNo #' @importFrom utils write.table read.csv askYesNo
#' @importFrom stringr str_extract_all str_split #' @importFrom stringr str_extract_all str_split
#' @importFrom infotheo condentropy discretize #' @importFrom infotheo condentropy discretize mutinformation
#' @importFrom corrplot corrplot colorlegend #' @importFrom corrplot corrplot colorlegend
#' @importFrom progress progress_bar #' @importFrom progress progress_bar
#' @importFrom lmerTest lmer
#' @importFrom lgr get_logger
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