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Zeller Group
SIAMCAT
Commits
f39fa038
Commit
f39fa038
authored
Jul 28, 2021
by
Jakob Wirbel
Browse files
Fix citation on the landing page, add a link to the zenodo repository.
parent
04b42f3e
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1
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README.md
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f39fa038
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@@ -30,7 +30,7 @@ In order to start with `SIAMCAT`, you need to install it from Bioconductor:
```
R
if
(
!
requireNamespace
(
"BiocManager"
,
quietly
=
TRUE
))
install.packages
(
"BiocManager"
)
BiocManager
::
install
(
"SIAMCAT"
,
version
=
"3.8"
)
BiocManager
::
install
(
"SIAMCAT"
)
```
Alternatively, you can install the current development version via
`devtools`
:
...
...
@@ -88,9 +88,15 @@ citation("SIAMCAT")
or by
> Wirbel J, Zych K, Essex M, Karcher N, Kartal E, Salazar G, Bork P,
Sunagawa S, Zeller G (2020) _SIAMCAT: user-friendly and versatile machine
learning workflows for statistically rigorous microbiome analyses_
bioRxiv 2020.02.06.931808; doi: https://doi.org/10.1101/2020.02.06.931808
Sunagawa S, Zeller G _Microbiome meta-analysis and cross-disease
comparison enabled by the SIAMCAT machine learning toolbox_
Genome Biol
**22**
, 93 (2021) https://doi.org/10.1186/s13059-021-02306-1
In this publication, we analyzed a large set of case-control microbiome
datasets. The metadata and taxonomic profiles of these studies are available
through a
[
Zenodo repository
](
https://doi.org/10.5281/zenodo.4454489
)
:
[

](https://doi.org/10.5281/zenodo.4454489).
## Examples of primary package output
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