1. 24 Sep, 2019 1 commit
  2. 28 Jun, 2019 1 commit
    • Jakob Wirbel's avatar
      Updated `summarize.features` function · 951eb6a7
      Jakob Wirbel authored
      Summarize features using a `tax_table` if such an object is present in the siamcat object.
      If not, create one from 'k__...;p__...;etc.` kind of feature names. Feature probably requires checks in the future.
      Adjust the `tax_table`, if the summarized features were the original features
      951eb6a7
  3. 22 Mar, 2019 1 commit
  4. 06 Mar, 2019 3 commits
  5. 18 Jan, 2019 1 commit
    • Jakob Wirbel's avatar
      Bugfix for summarize.features · 7c01d324
      Jakob Wirbel authored
      Summarize features did not work correctly before, since matching of higher order names was not performed correctly. For example, the features for the genus "g__Ruminococcus2" would be counted as well when summarizing the features of the genus "g__Ruminoccous" (without the "2").
      Now, the feature names are split by the identifiers of the taxonomic rank and the matching is performed in the resulting table. The function will needs some checks of the feature names in the future.
      7c01d324
  6. 29 Oct, 2018 1 commit
  7. 26 Sep, 2018 1 commit
  8. 25 Sep, 2018 3 commits
  9. 21 Sep, 2018 1 commit
  10. 09 Aug, 2018 1 commit
  11. 07 Aug, 2018 1 commit
  12. 25 Jul, 2018 5 commits
  13. 23 Jul, 2018 1 commit
  14. 26 Jun, 2018 1 commit