SIAMCAT issueshttps://git.embl.de/grp-zeller/SIAMCAT/-/issues2019-02-07T10:33:49Zhttps://git.embl.de/grp-zeller/SIAMCAT/-/issues/101Feature request for check.associations2019-02-07T10:33:49ZKonrad ZychFeature request for check.associationsadd an option to use paired=TRUE in `wilcox.test`
add an option to use paired=TRUE in `wilcox.test`
https://git.embl.de/grp-zeller/SIAMCAT/-/issues/98Figure out how to take care of the Rscript flavor2018-10-01T19:16:47ZKonrad ZychFigure out how to take care of the Rscript flavorShould it stay out of the Bioconductor or should we add it?Should it stay out of the Bioconductor or should we add it?https://git.embl.de/grp-zeller/SIAMCAT/-/issues/77Prune metadata function2018-05-17T10:09:42ZKonrad ZychPrune metadata function### Summary
A new function to prune metadata.
/cc @zych### Summary
A new function to prune metadata.
/cc @zychPublicationKonrad ZychKonrad Zychhttps://git.embl.de/grp-zeller/SIAMCAT/-/issues/54Unit testing2018-04-16T11:34:55ZKonrad ZychUnit testing### Summary
Add unit testing to SIAMCAT with [testthat](http://testthat.r-lib.org/index.html)
### Useful link
http://bioconductor.org/developers/how-to/unitTesting-guidelines/
/cc @zych### Summary
Add unit testing to SIAMCAT with [testthat](http://testthat.r-lib.org/index.html)
### Useful link
http://bioconductor.org/developers/how-to/unitTesting-guidelines/
/cc @zychKonrad ZychKonrad Zychhttps://git.embl.de/grp-zeller/SIAMCAT/-/issues/44Evolve to tidyverse2018-02-26T06:18:25ZKonrad ZychEvolve to tidyverse- [ ] elapsed time formatted with lubridate
- [x] documentation website with pkgdown
- [ ] ...- [ ] elapsed time formatted with lubridate
- [x] documentation website with pkgdown
- [ ] ...https://git.embl.de/grp-zeller/SIAMCAT/-/issues/27Update galaxy interface2018-04-17T09:42:48ZKonrad ZychUpdate galaxy interface- [ ] incorporate latest version
- [ ] test
- [ ] :package: ship it- [ ] incorporate latest version
- [ ] test
- [ ] :package: ship itPublicationhttps://git.embl.de/grp-zeller/SIAMCAT/-/issues/21Visualization with iTOL2018-02-19T20:12:10ZKonrad ZychVisualization with iTOL- [ ] making sure we know how to easily integrate those two tools :recycle:
- [ ] output of the model in a format that iTOL can easily use :deciduous_tree:- [ ] making sure we know how to easily integrate those two tools :recycle:
- [ ] output of the model in a format that iTOL can easily use :deciduous_tree:PublicationKonrad ZychKonrad Zych