Issues · Zeller Group / SIAMCAT

New issue

finalizing mlr integration 3 of 3 tasks completed

#1 · created Sep 15, 2017 by Konrad Zych Version 0.3.0 feature mlr urgent
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updated Jan 02, 2019
Update roxygen documentation

#2 · created Sep 15, 2017 by Konrad Zych Bioconductor submission docs urgent
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updated Jan 09, 2019
Mastering the issues 3 of 3 tasks completed

#3 · created Sep 26, 2017 by Konrad Zych Nijmegen conference feature gitLab urgent
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- 3
updated Apr 08, 2019
Splitting the core_functions file

#4 · created Sep 26, 2017 by Konrad Zych Nijmegen conference beautification code urgent
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- 3
updated Sep 28, 2017
Update data.splitter() 2 of 2 tasks completed

#7 · created Sep 27, 2017 by Jakob Wirbel Nijmegen conference beautification code urgent
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updated Sep 28, 2017
Update documentation for eval.result()

#8 · created Sep 27, 2017 by Jakob Wirbel Nijmegen conference docs urgent
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- 2
updated Sep 29, 2017
Update documentation 14 of 15 tasks completed

#11 · created Sep 27, 2017 by Jakob Wirbel Bioconductor submission beautification docs urgent 5h
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updated Mar 30, 2018
Update how plm.trainer takes in the training instances

#13 · created Sep 27, 2017 by Jakob Wirbel Nijmegen conference code urgent
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updated Sep 28, 2017
Update plm.trainer() 2 of 2 tasks completed

#14 · created Sep 27, 2017 by Jakob Wirbel Bioconductor submission code feature urgent
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updated Jan 16, 2018
Update how plm.predictor takes in the test data

#15 · created Sep 27, 2017 by Jakob Wirbel Nijmegen conference code feature urgent
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updated Oct 02, 2017
Taking care of the utils.R 4 of 4 tasks completed

#17 · created Sep 28, 2017 by Konrad Zych Nijmegen conference beautification code docs feature urgent
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updated Sep 28, 2017
Radical code clean-up fro metagenomics course 3 of 3 tasks completed

#18 · created Sep 28, 2017 by Konrad Zych Nijmegen conference beautification code mlr urgent
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updated Oct 02, 2017
Vignette

#23 · created Oct 16, 2017 by Konrad Zych Bioconductor submission docs urgent
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updated Jul 28, 2021
removing srcdir from R_script

#32 · created Dec 19, 2017 by Konrad Zych Version 0.3.0 beautification code urgent
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updated Jan 16, 2018
Updating R_script

#38 · created Feb 13, 2018 by Konrad Zych Version 0.4.0 beautification code urgent 3h
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updated Feb 15, 2018
Homogenous names 0 of 4 tasks completed

#41 · created Feb 19, 2018 by Konrad Zych Bioconductor submission beautification code urgent 2h
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updated Mar 28, 2018
Start using gitLab and issues system properly 2 of 4 tasks completed

#43 · created Feb 19, 2018 by Konrad Zych urgent 1w
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updated Apr 17, 2018
Bug in the interpretor.model.plot with heatmap.type="fc"

#45 · created Feb 26, 2018 by Konrad Zych bug code urgent 30m
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updated Feb 26, 2018
buggy test

#48 · created Feb 27, 2018 by Konrad Zych bug urgent
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updated Feb 27, 2018
Adjust prediction function 4 of 4 tasks completed

#49 · created Mar 06, 2018 by Jakob Wirbel code feature-request urgent
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updated Mar 14, 2018
Bioconductor submission checklist 10 of 12 tasks completed

#52 · created Mar 28, 2018 by Konrad Zych Bioconductor submission Mar 29, 2018 beautification code docs urgent 1d
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updated Mar 30, 2018
Accessors for SIAMCAT-class

#53 · created Mar 28, 2018 by Konrad Zych beautification code urgent 3h
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- 0
updated Mar 30, 2018
Vignette - how to get your data into SIAMCAT 3 of 3 tasks completed

#56 · created Apr 04, 2018 by Konrad Zych Bioconductor 1.0.1 release docs in-progress urgent vignette 3h
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updated May 23, 2018
Change how label object is build 2 of 2 tasks completed

#57 · created Apr 04, 2018 by Konrad Zych code in-progress urgent 1h
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updated Apr 17, 2018
Use vapply instead of sapply and use seq_along and seq_len instead of 1:length 0 of 3 tasks completed

#58 · created Apr 05, 2018 by Konrad Zych Bioconductor review 1 beautification code urgent 5h
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updated Apr 09, 2018
Format the code better 5 of 5 tasks completed

#59 · created Apr 05, 2018 by Konrad Zych Bioconductor review 1 beautification code in-progress urgent 2h
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- 1
updated Apr 17, 2018
Use getter's and setter's for accessing slots in your class 26 of 27 tasks completed

#60 · created Apr 05, 2018 by Konrad Zych Bioconductor review 1 beautification code in-progress urgent 4h
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updated Apr 16, 2018
Use small helper function 0 of 2 tasks completed

#61 · created Apr 05, 2018 by Konrad Zych Bioconductor review 1 beautification code urgent 3h
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updated Apr 18, 2018
Take advantage of vectorized functions 0 of 2 tasks completed

#62 · created Apr 05, 2018 by Konrad Zych Bioconductor review 1 beautification code urgent 3h
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updated Apr 18, 2018
Remove commented out code.

#63 · created Apr 05, 2018 by Konrad Zych Bioconductor review 1 beautification code urgent 30m
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updated Apr 05, 2018
Remove nested for loops 0 of 3 tasks completed

#64 · created Apr 05, 2018 by Konrad Zych Bioconductor review 1 beautification code urgent 3h
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updated Apr 18, 2018
Update DESCRIPTION 3 of 3 tasks completed

#65 · created Apr 05, 2018 by Konrad Zych Bioconductor review 1 beautification urgent 10m
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updated Apr 05, 2018
Use proper messaging

#66 · created Apr 09, 2018 by Jakob Wirbel beautification in-progress urgent
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updated Apr 09, 2018
Docs for internal functions 37 of 37 tasks completed

#68 · created Apr 15, 2018 by Konrad Zych Bioconductor review 1 beautification docs urgent 1h
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updated Apr 17, 2018
Bugs in check.associations 3 of 3 tasks completed

#85 · created Jul 19, 2018 by Konrad Zych bug urgent
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- 1
- 1
updated Jul 24, 2018
Bugs in read.features 1 of 3 tasks completed

#86 · created Jul 19, 2018 by Konrad Zych bug urgent
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- 1
updated Sep 20, 2018
Bug in model.interpretation.plot 0 of 1 task completed

#87 · created Jul 19, 2018 by Konrad Zych bug urgent
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updated Jul 19, 2018
bug in evaluate.predictions for models without resampling

#88 · created Jul 19, 2018 by Jakob Wirbel bug urgent
- CLOSED
- 1
updated Jul 19, 2018
fix constructor function 4 of 4 tasks completed

#89 · created Jul 23, 2018 by Jakob Wirbel feature-request urgent
- CLOSED
- 2
updated Aug 01, 2018
clean the label class 2 of 2 tasks completed

#90 · created Jul 23, 2018 by Jakob Wirbel beautification code urgent
- CLOSED
- 2
updated Aug 01, 2018
No NA handling in filter.features

#91 · created Jul 24, 2018 by Konrad Zych bug urgent
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- 2
updated Aug 09, 2018
Bug in siamcat() creator function

#99 · created Jan 08, 2019 by Konrad Zych bug code urgent 1h
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- 2
updated Jan 09, 2019
bug in evaluate.predictions()

#100 · created Jan 09, 2019 by Konrad Zych bug urgent
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updated Jan 09, 2019