1. 21 Mar, 2019 6 commits
  2. 06 Mar, 2019 5 commits
  3. 05 Mar, 2019 2 commits
  4. 04 Mar, 2019 3 commits
    • Jakob Wirbel's avatar
      86905fe1
    • Jakob Wirbel's avatar
      re-roxygenize. · b943765b
      Jakob Wirbel authored
      b943765b
    • Jakob Wirbel's avatar
      Added Variance filter to filter.features · d6864a10
      Jakob Wirbel authored
      Added variance filter to the filter.features function. Additionally, fixed some bugs (cum.abundance method was misspelled in inital checks), fixed some messaging, and added a check for the number of features that would be retained after filtering.
      
      Additionally, added import of the function rowVars in the import_packages file.
      
      Furthermore, adjusted the documentation of filter.features to match the new function.
      d6864a10
  5. 01 Mar, 2019 1 commit
  6. 28 Feb, 2019 1 commit
  7. 18 Jan, 2019 1 commit
    • Jakob Wirbel's avatar
      Bugfix for summarize.features · 7c01d324
      Jakob Wirbel authored
      Summarize features did not work correctly before, since matching of higher order names was not performed correctly. For example, the features for the genus "g__Ruminococcus2" would be counted as well when summarizing the features of the genus "g__Ruminoccous" (without the "2").
      Now, the feature names are split by the identifiers of the taxonomic rank and the matching is performed in the resulting table. The function will needs some checks of the feature names in the future.
      7c01d324
  8. 09 Jan, 2019 5 commits
  9. 02 Jan, 2019 6 commits
  10. 20 Nov, 2018 1 commit
  11. 11 Nov, 2018 1 commit
  12. 09 Nov, 2018 2 commits
  13. 01 Nov, 2018 1 commit
  14. 30 Oct, 2018 2 commits
  15. 29 Oct, 2018 1 commit
  16. 24 Oct, 2018 1 commit
  17. 19 Oct, 2018 1 commit