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Zeller Group
metaG_course_2021_10_07
Commits
4bea5d36
Commit
4bea5d36
authored
Oct 04, 2021
by
Alessio Milanese
Browse files
Update README.md
parent
ea31b059
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1
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tax_practical/README.md
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4bea5d36
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@@ -330,18 +330,18 @@ We use [mOTUs2](https://github.com/motu-tool/mOTUs_v2) to create taxonomic profi
motus profile -f filtered_1P -r filtered_2P -s filtered_1U,filtered_2U -o test_sample_relax.motus -t 8 -g 1 -l 40
cat test_sample_relax.motus | grep -v "0.0000000000" | grep -v "#" | wc -l
```
We obtain
218
species (
79
more species than the default parameters). While, with:
We obtain
356
species (
198
more species than the default parameters). While, with:
```
motus profile -f filtered_1P -r filtered_2P -s filtered_1U,filtered_2U -o test_sample_stringent.motus -t
2
-g 6 -l 90
motus profile -f filtered_1P -r filtered_2P -s filtered_1U,filtered_2U -o test_sample_stringent.motus -t
8
-g 6 -l 90
cat test_sample_stringent.motus | grep -v "0.0000000000" | grep -v "#" | wc -l
```
we profile only
86
species (
53
less than using the standard parameters).
we profile only
91
species (
67
less than using the standard parameters).
If you don't manage to run them (~4 mins each), you can download the profiles with:
```
wget https://www.embl.de/download/zeller/metaG_course/motus_profiles/test_sample/test_sample.motus
wget https://www.embl.de/download/zeller/metaG_course/motus_profiles/test_sample/test_sample_relax.motus
wget https://www.embl.de/download/zeller/metaG_course/motus_profiles/test_sample/test_sample_stringent.motus
wget https://www.embl.de/download/zeller/metaG_course
_2021
/motus_profiles/test_sample/test_sample.motus
wget https://www.embl.de/download/zeller/metaG_course
_2021
/motus_profiles/test_sample/test_sample_relax.motus
wget https://www.embl.de/download/zeller/metaG_course
_2021
/motus_profiles/test_sample/test_sample_stringent.motus
```
</p>
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