Commit 801a3b86 authored by Alessio Milanese's avatar Alessio Milanese
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parent 1ac06461
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# Setup
If you are in the denbi VM, open the terminal and run:
conda activate mgcourse
If you run it on your computer, you need to install the tools yourself. We suggest to use conda to install:
- mOTUs3 (`conda install -c bioconda motus on conda`)
- MetaPhlAn3 (`conda install -c bioconda metaphlan`)
- trimmomatic (`conda install -c bioconda trimmomatic`)
- FastQC (`conda install -c bioconda fastqc`)
# Practical 1: Quality control and read trimming
Objectives of the practical:
......@@ -15,12 +29,7 @@ Required file:
- []( (~22 Mb)
- []( (~22 Mb)
## Setup
Open the terminal and run:
conda activate mgcourse
## Exercises
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