Commit 801a3b86 authored by Alessio Milanese's avatar Alessio Milanese
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Update README.md

parent 1ac06461
![alt text](https://www.embl.de/download/zeller/metaG_course_2021/a.png)
# Setup
If you are in the denbi VM, open the terminal and run:
```
conda activate mgcourse
```
If you run it on your computer, you need to install the tools yourself. We suggest to use conda to install:
- mOTUs3 (`conda install -c bioconda motus on conda`)
- MetaPhlAn3 (`conda install -c bioconda metaphlan`)
- trimmomatic (`conda install -c bioconda trimmomatic`)
- FastQC (`conda install -c bioconda fastqc`)
# Practical 1: Quality control and read trimming
Objectives of the practical:
......@@ -15,12 +29,7 @@ Required file:
- [https://www.embl.de/download/zeller/metaG_course/fastq_files/raw_reads_1.fastq](https://www.embl.de/download/zeller/metaG_course/fastq_files/raw_reads_1.fastq) (~22 Mb)
- [https://www.embl.de/download/zeller/metaG_course/fastq_files/raw_reads_2.fastq](https://www.embl.de/download/zeller/metaG_course/fastq_files/raw_reads_2.fastq) (~22 Mb)
## Setup
Open the terminal and run:
```
conda activate mgcourse
```
## Exercises
......
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