incroducing TestCommander

pom.xml

@@ -8,7 +8,7 @@
 		<version>5.0</version> <relativePath /> </parent> -->
 	<groupId>embl.almf</groupId>
 	<artifactId>AutoMicTools_</artifactId>
-	<version>1.1.26-SNAPSHOT</version>
+	<version>1.1.27-SNAPSHOT</version>
 
 	<name>plugins/AutoMicTools_.jar</name>
 	<description>Collection of tools for automated (feedback) microscopy data acquisition and analysis</description>

src/main/java/automic/online/microscope/TestCommander.java

+package automic.online.microscope;
+
+import java.io.File;
+import automic.utils.logger.Logger;
+import automic.utils.logger.TextWindowLogger;
+import automic.geom.Point3D;
+import automic.parameters.ParameterCollection;
+import ij.gui.Roi;
+
+public class TestCommander implements MicroscopeCommanderInterface {
+	Logger testLogger;
+	
+	
+	@Override
+	public void parseSettings(ParameterCollection _microscopeSettings) {
+		
+	}
+	
+	@Override
+	public void connect() {
+		testLogger=new TextWindowLogger("AutoMic pipeline test");
+	}
+	
+	@Override
+	public void skipJobsInCurrentPosition() {
+		testLogger.sendInfoMessage("Received command skip Jobs in current position");
+	}
+	
+	@Override
+	public void stopCommander() {}
+
+	@Override
+	public void submitJobPixels(File _sourceImageFile, String _jobNameToPerform, Point3D[] _positions,Roi[] _bleachRois)throws Exception{
+		testLogger.sendInfoMessage("Received command for imaging job for positions"+_positions.length+"positions:");
+		for (Point3D p:_positions) {
+			testLogger.sendInfoMessage(String.format("X= %f; Y= %f; Z= %f;", p.getX(),p.getY(),p.getZ()));
+		}
+	}
+
+	@Override
+	public void submitJobPixels(File _sourceImageFile, String _jobNameToPerform, Point3D _position) 
+	throws Exception{
+		submitJobPixels(_sourceImageFile, _jobNameToPerform, new Point3D[] {_position},null);
+	}
+
+	@Override
+	public void submitJobPixels(File _sourceImageFile, String _jobNameToPerform, Point3D[] _positions) 
+	throws Exception{
+		submitJobPixels(_sourceImageFile, _jobNameToPerform, _positions, null);
+	}
+	
+
+}