xml writer can now handle filepaths with spaces -- needed for LMD project

pom.xml

@@ -8,7 +8,7 @@
 		<version>5.0</version> <relativePath /> </parent> -->
 	<groupId>embl.almf</groupId>
 	<artifactId>AutoMicTools_</artifactId>
-	<version>1.1.27-SNAPSHOT</version>
+	<version>1.1.28-SNAPSHOT</version>
 
 	<name>plugins/AutoMicTools_.jar</name>
 	<description>Collection of tools for automated (feedback) microscopy data acquisition and analysis</description>

src/main/java/automic/online/jobdistributors/JobDistributor_Abstract.java

@@ -51,7 +51,7 @@ public abstract class JobDistributor_Abstract extends RunJythonOnMonitoredFiles
 	private static final String KEY_SAVE_PARAMETERS="Save Parameters";
 	private static final String KEY_FILE_EXTENSION="Image File Extension";
 	private static final String KEY_FILL_JOB_PARAMETERS_FROM_FILE="Fill parameters from file";
-	private static final String KEY_INPUT_JOB_PARAMETERS="Input file with job parameters";
+	private static final String KEY_INPUT_JOB_PARAMETERS="Input file with job paramters";
 	private static final String KEY_MICROSCOPE_COMMANDER="Microscope commander";
 	
 

src/main/java/automic/online/jobdistributors/xml/JobDistributorXMLWriter.java

@@ -2,6 +2,7 @@ package automic.online.jobdistributors.xml;
 
 import java.util.List;
 import java.io.File;
+import java.io.FileOutputStream;
 
 import javax.xml.parsers.DocumentBuilder;
 import javax.xml.parsers.DocumentBuilderFactory;
@@ -104,7 +105,10 @@ public class JobDistributorXMLWriter {
 		
 		DOMSource source = new DOMSource(_document);
         
-		StreamResult result = new StreamResult(targetFile);
+		//changed in order to allow for file paths with spaces ("%20"):
+		// StreamResult result = new StreamResult(targetFile);
+		StreamResult result = new StreamResult(new FileOutputStream(targetFile));
+		
 		transformer.transform(source, result);
 		// Output to console for testing
         StreamResult consoleResult =	new StreamResult(System.out);

src/main/java/automic/parameters/xml/ParameterXmlWriter.java

 package automic.parameters.xml;
 
 import java.io.File;
+import java.io.FileNotFoundException;
+import java.io.FileOutputStream;
 
 import javax.xml.parsers.DocumentBuilder;
 import javax.xml.parsers.DocumentBuilderFactory;
@@ -57,12 +59,12 @@ public class ParameterXmlWriter {
 		return document;
 	}
 	
-	private void writeDocumentToFile(Document _document){
+	private void writeDocumentToFile(Document _document) throws FileNotFoundException{
 		TransformerFactory transformerFactory = TransformerFactory.newInstance();
 		
 		DOMSource source = new DOMSource(_document);
         
-		StreamResult result = new StreamResult(targetFile);
+		StreamResult result = new StreamResult(new FileOutputStream(targetFile));
 		
 		try{
 

src/main/java/automic/postaq/pipeline/xml/PipelineXMLWriter.java

 package automic.postaq.pipeline.xml;
 
 import java.io.File;
+import java.io.FileOutputStream;
 
 import javax.xml.parsers.DocumentBuilder;
 import javax.xml.parsers.DocumentBuilderFactory;
@@ -102,7 +103,7 @@ public class PipelineXMLWriter {
 		
 		DOMSource source = new DOMSource(_document);
         
-		StreamResult result = new StreamResult(targetFile);
+		StreamResult result = new StreamResult(new FileOutputStream(targetFile));
 		transformer.transform(source, result);
 		// Output to console for testing
         StreamResult consoleResult =	new StreamResult(System.out);